ChIP-Seq datasets in the aforementioned cell-lines were obtained from the ENCODE repository (specific ENCODE sample ids are shown in the following sections). NCBI RefSeq database19 has been utilized as the reference annotation of coding and non-coding genes that were incorporated in the process of...
Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq Ruitu Lyu Yun Gao Chuan He Nature Communications(2024) Biallelic GGGCC repeat expansion leading to NAXE-related mitochondrial encephalopathy Kokoro Ozaki Yukiko Yatsuka ...
In the FANTOM5 project, transcription initiation events across the human and mouse genomes were mapped at a single base-pair resolution and their frequencies were monitored by CAGE (Cap Analysis of Gene Expression) coupled with single-molecule sequencing. Approximately three thousands of samples, consi...
In the FANTOM5 project, transcription initiation events across the human and mouse genomes were mapped at a single base-pair resolution and their frequencies were monitored by CAGE (Cap Analysis of Gene Expression) coupled with single-molecule sequencing. Approximately three thousands of samples, consi...
Briefly, TCGA level 3 RNA-seq data were used to analyze gene expression values, and transcripts per million (TPM) was used as the measure of expression in this software. Box plot graphs were generated using Highcharts in this software. The values from primary tumors were classified based on ...
Raja Singh 4 , Paolo Mercorelli 5,* , Edison Gundabattini 6,* and Darius Gnanaraj Solomon 7 1 SQL Database Administration, Infosys Technologies Limited, Hyderabad 500032, India; yashwanthreddy.k@infosys.com 2 Manufacturing Systems and Engineering Management, California State University, Northridge...