The method of correlated basis functions (CBF) is applied at the variational level to the transverse Ising model in two and three spatial dimensions (D=2,3). The model consists of Pauli spins arranged on a simple square or cubic lattice, experiencing nearest-neighbor interactions through their ...
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Nature Plantsnature plantshttps://doi.org/10.1038/s41477-025-01933-x ArticleRegulation of alternative splicing by CBF-mediated protein condensation in plant response to cold stress Diyi Fu 1 , Yue Song 1 , Shifeng Wu 1 , Yue Peng 1 , Yuhang Ming 1 , Z...
Regulation of alternative splicing by CBF-mediated protein condensation in plant response to cold stress doi:10.1038/s41477-025-01933-xBiological SciencesBiochemistry and Cell BiologyGeneticsCold acclimation is critical for the survival of plants in temperate regions under low temperatures, and C-REPEAT ...
In these lines, c-Myc-ER overcomes inhibition of cell cycle progression mediated by CBFb-SMMHC. CBFb-SMMHC does not affect endogenous c-Myc RNA levels, indicating that CBF does not regulate the c-Myc gene. Conversely, c-Myc-ER does not alter CBF DNA-binding activity. Thus, c-Myc-ER ...
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2.1. Expression of Cbfa1 The expression of Cbfa1 was analyzed by whole mount in situ hybridization and by lacZ staining of embryos, newborn, and adult mice. Results of whole mount in situ hybridizations at stages E11.5, E12.5 and E13.5 performed in Cbfa1+/+ embryos were identical in dis...
2000. However, due to a lack of information about the whole structures of CBFα-DNA and CBFα-CBFβ-DNA complexes, the structural basis of the most important elements—DNA recognition by CBFα and the allosteric regulation of CBFα-DNA binding by CBFβ—remain unclear. Here, we present ...
The CBF proteins directly regulate COR genes by the CCGAC cis-acting element known as the C-repeat (CRT)/ dehydration-responsive element (Thomashow 1999). However, not all CBF-regulated COR genes are directly regulated by CBF proteins. Analysis of the promoters of the CBF-activated COR genes...