Brainnetome Toolkit: A MATLAB GUI toolkit of complex network measures. BioNeCT: A cohesive platform for analyzing brain network connectivity in EEG recordings. GRETNA: A toolbox for comprehensive analyses of topology of the brain connectome. MIBCA: Automated all-in-one connectivity toolbox with ...
symmetrize_mats: symmetrize a connectivity matrix by either the maximum, minimum, or average of the off-diagonal elements. You may select one of these as an argument to create_mats. Major changes brainGraph_GLM has 2 new function arguments: level allows you to perform inference for graph-...
The structural connectivity weighted matrix G with elements\(g_{ij}\)in Eq. (1) is expected to show the weights of connections between regions in the brain. For this purpose, a\(246 \times 246\)averaged DTI matrix in Brainnetome atlas69obtained from 32 adults was used(mean age 31.5 year...
We used a custom-made MATLAB script using the ‘ft_read_cifti’ function (Fieldtrip toolbox95) to extract the average time series of all the grayordinates in each region of the Glasser378, Brainnetome246 and DK80 parcellations, which are defined in the HCP CIFTI grayordinates standard space...
Connectivity-based Brainnetome atlas[39] in different views. A: Surface rendering of the parcellations; B: 3D volume rendering; C: three slices in the sagittal view, coronal view and axial view, respectively 脑网络组图谱能够提供每个亚区的解剖和功能连接模式, 从而明确每个亚区的组织模式及功能意义,...
Zhang, Qi-TingYao, QianLu, HaifengZhang, HuiLi, Ge-FeiWu, Yi-LanSci RepScientific ReportsZhang J, Su J, Wang M, Zhao Y, Zhang QT, Yao Q et al (2017) The posterior insula shows disrupted brain functional connectivity in female Migraineurs without Aura based on Brainnetome atlas. Sci ...
toolbox ( https://www.fil.ion.ucl.ac.uk/spm/software/spm12/ ) for achieving an accurate segmentations of brain tissues. the second step was to clean the tissue maps by applying morphological operations, and then use the tissue maps to create surface reconstructions. finally, the fem mesh ...
similar patterns compared to the connectome of the validation dataset (the other four marmosets): the MRI-based atlas resulted in a high correlation of r = 0.93 between the connectome of the template subject and that of the validation dataset (Fig. 6A), and the connectivity-based atlas had ...
Miscellaneous network tools were used from the Network Community Toolbox (http://commdetect.weebly.com) and the Brain Connectivity Toolbox90 (https://sites.google.com/site/bctnet/Home). The brain plots were vizualized with the Connectome Workbench software91 (https://github.com/Washington-...
The Brainnetome Atlas65 adding additional nuclei within midbrain, and the ICBM-DTI-81 white matter atlas66 were separately transformed into each participant’s DTI space67. Then we used “fslmeants” command of FSL to obtain 12 subcortical nuclei ROIs, including the bilateral vCa, dCa, vmPu...