Online publication inBMC Genomicsgives you the opportunity to publish large datasets, large numbers of color illustrations and moving pictures, to display data in a form that can be read directly by other software packages so as to allow readers to manipulate the data for themselves, and to crea...
Online publication inBMC Medical Educationgives you the opportunity to publish large datasets, large numbers of color illustrations and moving pictures, to display data in a form that can be read directly by other software packages so as to allow readers to manipulate the data for themselves, and...
Extracting local graph: InSection 2.2, we have constructed graphG = (V, E, X) for lncRNA. Then we extract each node {v1, v2, …, vn} and its neighbor nodes in graphGto form the corresponding local graph {G1, G2, …, Gn} ofnnodes, whereGi ∈ Grepre...
Tencent Meeting software was employed to provide a live broadcast of the online practice. Table 1 Description of the four teaching approaches Full size table Blended teaching with flipped classroom using roleplay In line with the integrative review conducted by Rønning and Bjørkly [20], the ...
Full size image Methods Intuitively, network construction is based on an iterative procedure. The key idea is to construct a regulatory network starting from a graph without edges in which each node represent a gene or a miRNA and to add connections between nodes imitating some well known motif...
The code should be published under a free license to encourage re-use and further developments, and when possible, open source software and programming languages should be preferred to maximize accessibility and reproducibility. The lack of code sharing is still, however, a major issue in the ...
The first three principal components of the population (parameter --pca 3) were calculated using Plink software (version: 1.9) [35]. The distribution plots of PC1–PC2, PC1–PC3, and PC2–PC3 samples were mapped using the “ggplot2” package in R software. The identity-by-state (IBS) ...
In addition, there are a collection of software tools that implement a specific set of methods or lack accommodations to import data from multiple analysis platforms [17, 26,27,28,29,30,31,32,33,34,35]. We present tidyproteomics, an open-source R package for the post-analysis and ...
Using the Motif Scan Software http://www.expasy.org we also detected a RUN (RPIP8, UNC-14 and NESCA) domain in the Iporin sequence (aa 1031–1175; Figure 2B). This domain was shown to be involved in the func- tion of small GTPases and can also be found in proteins which play ...
The trees shown below were drawn using FigTree (http://tree.bio.ed.ac.uk/software/figtree), PhyD3 (https://phyd3.bits.vib.be), GraphViz dot (https://www.graphviz.org) and D3.js (https://d3js.org). Zika virus Zika virus is an RNA virus of the family Flaviviridae, genus ...