Retrotransposons can be further divided into long terminal repeat (LTR), and non-LTR elements, including long and short interspersed nuclear repeat elements (LINEs and SINEs). Other retrotransposons include Penelope-like (PLEs) and DIRS-like elements. Each one of these TE orders can be further ...
Price AL, Jones NC, Pevzner PA. De novo identification of repeat families in large genomes. Bioinformatics. 2005;21:i351–8. Article PubMed CAS Google Scholar Goubert C, Modolo L, Vieira C, ValienteMoro C, Mavingui P, Boulesteix M. De novo assembly and annotation of the Asian Tiger ...
7) low production price and suitability for use in developing countries; 8) amena- bility to industrial mass production; 9) Integration of manufacture and packaging; 10) Low cost of transporta- tion due to the small size and weight of a unit dosage; 11) capacity to augment a healthy acidi...
Price EM, Prather RS, Foley CM: Multipotent adult progenitor cell lines originating from the peripheral blood of green fluorescent protein transgenic Swine. Stem Cells Dev. 2006, 15 (4): 507-522. 10.1089/scd.2006.15.507. Article Google Scholar Pravtcheva DD, Wise TL: Transgene instability ...
LTR retrotransposons constitute a major portion of the rice genome [52]. Retrotansposons are activated during stress, wounding and pathogen attack [53, 54]. For example transcription of the tobacco retrotransposon Tnt1 could be induced by pathogens and microbial elicitors, as well as by abiotic ...
LTR – long terminal repeat, M – mean, MEA – multielectrode array, MLV – murine leukemia virus, PBS – phosphate buffered saline, PCR – polymerase chain reaction, rpm – revolu- tions per minute, SDS-PAGE – sodium dodecyl sulfate polyacrylamide gel electrophoresis, SE – standard error,...
A notable feature of the rice genome is that LTR retrotransposons were identified in 30.7% of the rice genome [63], which suggests that LTR retrotransposons may be an important source of CNVs in rice. Indeed, we performed a cursory analysis for TE/repeat contents in regions that were identifi...
Individual embryos were genotyped using primers for hdac1 (Hdac1F: 5'-GGC AGG CGC AGG CTG TAA TT-3'; Hdac1 Intron1R: 5'-GGC TAA ACC CGG CTA ACA AT-3'); the 3' Long Terminal Repeat of the MLV vector (MLV 3LTR F: 5'- AAA GAC CCC ACC TGT AGG TTT G-3') [43]. Animal ...
(average density = 0.12) compared to other genes in the genome (average density = 0.05), while other types of TEs (including LINE, LTR, and SINE) showed no significant difference (Additional file9: Fig. S6). This finding indicates DNA transposons may have played a role in the ...
500 nt with maximum 1500 nt of internal sequence. Harvested putative LTR retrotransposons were filtered using LTRdigest, which checked for tRNA binding sites. In addition, LTRdigest used Hidden Markov Model (HMM) profiles to identify retrotransposon enzymes (from the GyDB HMM profile collection of ...