blastn is a command-line tool from the BLAST+ suite used for searching nucleotide databases using a nucleotide query. It identifies regions of similarity between your query sequence and sequences within a specified database. blastn is highly configurable, allowing for fine-tuning of search ...
[-min_raw_gapped_score int_value] [-template_type type] [-template_length int_value] [-dust DUST_options] [-filtering_db filtering_database] [-window_masker_taxid window_masker_taxid] [-window_masker_db window_masker_db] [-soft_masking soft_masking] [-ungapped] [-culling_limit int_v...
https://www.ncbi.nlm.nih.gov/books/NBK279684/#appendices.Options_for_the_commandline_a 1. 以input的reads为query,contigs(fa格式,包含在Clustering的输出文件中)为database. 2. blastn使用参数如下: -db 数据库文件名前缀 -query -out 输出文件名 -outfmt -num_threads -evalue -num_alignments -word_...
BLAST+ features Options for the command-line applications. [C2] 最后编辑于 :2020-03-25 22:34:38 ©著作权归作者所有,转载或内容合作请联系作者Bioinformation notes © 著作权归作者所有 举报文章 嗒嘀嗒嗒嘀嗒嘀嘀 吾为镜,汝乐,吾笑,汝悲,吾泣,汝言说,吾聆听,汝归去,吾忘记。 总资产330 共写了83...
blastn supports a variety of command-line options that allow you to customize the search parameters, such as the database to use, the output format, or the filtering options. You can use these options to fine-tune the search to suit your needs. ...
blastn supports a variety of command-line options that allow you to customize the search parameters, such as the database to use, the output format, or the filtering options. You can use these options to fine-tune the search to suit your needs. ...
NCBI线下blastn-short比对 ncbi的BLAST比我想象中的要强大,用普通blastn貌似不能将basepire数小于50的序列比对到基因组。像我,想将一些15bp的序列比对到基因组上做统计。其实BLAST+中有一些针对小于30bp序列比对(blast-short)的设定参数。