The Venturia inaequalis effector repertoire is dominated by expanded families with predicted structural similarity, but unrelated sequence, to avirulence proteins from other plant-pathogenic fungi Mercedes Rocafortet al. Published inBMC Biology3 November 2022 ...
where ni,j is the number of cells that are assigned to the i-th predicted domain label with their true domain label as the j-th label, ai=∑i(nij) and bj=∑j(nij). For spatial domain annotation with multiple slices, macro-F1 was used to evaluate the performance of each method: mac...
et al. Analysis of predicted loss-of-function variants in UK Biobank identifies variants protective for disease. Nat. Commun. 9, 1613 (2018). Article PubMed PubMed Central Google Scholar Akbari, P. et al. Sequencing of 640,000 exomes identifies GPR75 variants associated with protection from...
45. The number of interface contacts is defined as elsewhere in this paper (any residues with an interface atom within 10 Å of the other chain), and the plDDT is the predicted lDDT score from AlphaFold2 taken over the interface residues as defined by the interface contacts. Building ...
OrganismSize (Mb)GC%Predicted proteinsNo. of genes forNo. of pseudogenesTotal number of genesReferences (Assembly level) rRNAtRNAOther RNA Myxococcus xanthus strain DK101 9.35 68.77 7433 12 66 4 87 7602 [36] (Complete genome) Myxococcus xanthus strain DZ2 9.36 68.86 7408 12 66 4 86 7576 ...
Next, to understand the volume of previous studies on target genes associated with the MGPs predicted for CNS-GBM/Oligo, papers on 13 target genes from the predicted MGPs were retrieved from PubMed (as of May 2021; Fig.5b). This paper retrieval was implemented twice, once with an additional...
Figure 4.Plant physiological efficiencies for gymnosperm and angiosperm trees as predicted by the scaling analyses for the aboveground part (upper panel) and the whole-tree weight (lower panel). In the headers from left to right, the fresh weight of the plant (kg shoots), the tree respiration...
In this paper, a combination of 3D computational model simulations and experimental observations is used to provide important mechanistic insights into different processes involved in the contraction of blood clots. Model simulation results quantify microscale mechanisms of platelet–fibrin fiber interactions ...
(Merks and Glazier2005; Merks and Koolwijk2009; Anderson et al.2007). In this way, previous cell-based models have predicted potential mechanisms for the formation of vascular networks (Merks et al.,2004,2006; Szabo et al.,2007,2008; Guidolin et al.,2009; Scianna et al.,2011; Köhn-...
The accessibility of the citrullination sites was estimated from the AlphaFold116, predicted human protein structure database. For each of the AlphaFold structures, the exposure of all arginine residues was found. The exposure was estimated as the coordination number (CN). The CN is the number of...