(FC) layers with Leaky Relu as the activation function were employed to refine these features. We then concatenated the features from all slices and input them into an attention-based module. Here, we used two different FC layers to process the above features according to Eq. (1) and ...
Prediction module All coding was carried out in Python 3. Scikit-learn (0.24.1)72 implementations of the GPR, RFR, LR and MLP methods were tested in various combinations, and the results are shown in Supplementary Information. For data handling, calculations and graph visualization the following...
The hijacking of early developmental programs is a canonical feature of gliomas where neoplastic cells resemble neurodevelopmental lineages and possess mechanisms of stem cell resilience. Given these parallels, uncovering how and when in developmental ti
3c). In the ‘Synteny Image’ module, synteny images can be constructed between the chromosomes of any two genomes, and downloaded for further study (Fig. 3d). Fig. 3 Synteny page of the PGDB. (a) Querying synteny blocks between genomes and drawing synteny images. (b) The synteny blocks...
[7,171,172]. Seeds and plants could be primed. Seed priming increases seedlings’ tolerance of environmental stresses. Primed plants respond faster and/or more strongly to recurring defense stimuli. Some priming states are relatively short-term and disappear within a few days, while others are ...
single simple tokenizer, which may result in information loss. Afterwards, in module C (see Fig.7C), the iDNA-ABF uses BERT encoders individually to extract different embeddings processed by tokenization. The iDNA-ABF then combines multi-scale embeddings based on BERT output in module D to ...
Asgard archaea, which affiliate with eukaryotes in the tree of life [7,8], encode many proteins that they share with eukaryotes [68]. We detected four eukaryotic signature protein families (ESPs) in module 48 that were described in previous studies (Additional file2: Fig. S14) [7,8,69]...
(Additional file1: Fig. S3t). Further biological module clustering directly revealed OXR1-depletion impaired axon guidance at multiple levels, from axon genesis to neurite extension and synapse formation [37]. Among them, the dysregulated Reelin pathway, cell adhesion molecules (ie.NRCAM), Class-...
One possible solution is the use of network concepts to identify groups of genes that when perturbed give the same phenotype and hence form a disease module [69]. If systems biology can rise to the challenge of predicting the mutations that are most likely to allow a cancer to relapse, we...
Frey A, Hartig J, Rupp AA (2009) An NCME instructional module on booklet designs in large-scale assessments of student achievement: theory and practice. Educ Meas Issues Pract 28(3):39–53 Article Google Scholar Gantner S, Andersson AF, Alonso-Sáez L, Bertilsson S (2011) Novel primers...