java science bioinformatics genomics biology ngs next-generation-sequencing Updated Oct 3, 2024 Java GMOD / jbrowse Star 463 Code Issues Pull requests Discussions JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-com...
all these cues were finally combined theoretically to model effector perception networks (Boller & Felix, 2009;Jones & Dangl, 2006;Van der Hoorn & Kamoun, 2008). Further in-depth genome analysis revealed the omnipresence of effector-like genes among all the pathogens. For example, the genome of...
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evolution, behavior, and genetics. Such biases potentially limit how individuals from diverse backgrounds would find an inclusive community in which to conduct their science. Further, the cultural biases behind what are considered a “good questions” in scientific fields...
In the sensitivity test of SpaDo combined with spot deconvolution methods, we benchmarked Cell2location against RCTD and SPOTlight. For Cell2location, the single-cell regression model was trained with default parameters and the Cell2location model was obtained with parameter detection_alpha = 20...
The rapid advancement of spatial transcriptomics technologies has revolutionized our understanding of cell heterogeneity and intricate spatial structures within tissues and organs. However, the high dimensionality and noise in spatial transcriptomic data
shown in Fig.1a, b. The mean length of cod in the area was calculated from the survey report34in the following way: The age distribution of cod, acoustic and bottom trawl estimates combined from merged survey areas B and C34which contain the location of the experiment, was combined with ...
“Responsible Conduct of Research”—a required class for first-year PhD students at Caltech. They told me that “it is a question of how you want to spend your time” and “a lot of the scientific literature has problems […], science is an imperfect process”. What was an aspiring ...
Multiple drivers and reporters were stably combined by standard recombination methods. For a list of the full genotypes used in this study, see Supplementary Table 1. Temporal control of gene expression Temporal control of gene expression was used to label the shape of individual cells within the ...
To begin to address plagiopatagial initiation and diversification, we combined histological assays, geometric morphometrics, scanning electron microscopy, and studies of cellular processes to characterize the developing plagiopatagium. For our morphometric studies, we used a range of bat species with disti...