This preface provides information I expect will be important for someone reading and using this book. The first part introduces the book itself. The second talks about Python. The third part contains other notes of various kinds. Introduction I would like to begin with some comments about this ...
● Hands-on projects to solidify concepts and enhance practical skills. ● In-depth exploration of Python for its efficient use in bioinformatics. What you will learn ● Understand core Python programming concepts for data analysis. ● Manipulate and analyze biological data effectively using Python. ...
Bioinformatics & Machine Learning Projects Cervical Cancer Prediction Model Advanced machine learning implementation for early cancer detection and risk assessment. Technologies & Methods Programming: Python Data Processing: Data cleaning, Feature engineering Analysis: Principal Component Analysis (PCA), Recursive...
Nextflow pipeline to run somatic alteration calling from single-cell data using SComatic Nextflow 1 GPL-3.0 1 4 0 Updated Feb 17, 2025 singlecell_scripts Public Python scripts for MESOMICS2 single-cell analyses Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jan 10, 2025 IARC-nf Public ...
is an automated GUI pipeline developed using Python. GAME is a fast, user-friendly, 30 days free genome analysis suite for plant genome assembly and annotation from the Illumina sequences. Requirement: 64 GB RAM and 100 GB disk space
In addition to package maintenance, we have developed several tools to aid in the upkeep of Arch Linux-based distributions and projects. We provide a comprehensive package search page to help users find relevant information easily. We have also co-contributed the development of the lilac b...
Using GOATools (for Python users) pip install goatools """ Download Necessary Data GOATools requires the latest GO ontology and annotations. You can download these files from the Gene Ontology Consortium: GO Ontology: http://purl.obolibrary.org/obo/go/go-basic.obo ...
projects, such as Genome 10K. If common variants are not available, variant calling can be performed directly from scRNA-seq using cellSNP or freebayes. The obtained sparse genotype data for all cells allows the reconstruction of partial genotypic states for the multiplexed samples and then for ...
PyMol is a graphical tool that was programmed using python. This tool is mostly used to visualize 3D structures of proteins and nucleic acid. Now it is widely used for macromolecules imaging for publications. PyMOL also includes plugins for macromolecular analysis, homology modeling, protein–ligand...
The PRIDE (Proteomics Identifications Database; http://www.ebi.ac.uk/pride) was first described in 2006 and has been linked with data from the Human Proteome Organization projects as well as iTRAQ quantitative data (Jones et al., 2008). Show moreView chapter Book 2010, Hayes' Handbook of ...