Bioinformatics of nanopore sequencingdoi:10.1038/s10038-019-0659-4Wojciech MakaowskiVictoria ShabardinaJ Hum Genet
Rapid advances in nanopore technologies for sequencing single long DNA and RNA molecules have led to substantial improvements in accuracy, read length and throughput. These breakthroughs have required extensive development of experimental and bioinformat
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These breakthroughs have required extensive development of experimental and bioinformatics methods to fully exploit nanopore long reads for investigations of genomes, transcriptomes, epigenomes and epitranscriptomes. Nanopore sequencing is being applied in genome assembly, full-length transcript detection and ...
Nanopore Sequencing PacBio SMRT sequencing Bioinformatics Workflow for WGS The bioinformatics workflow for WGS is similar to that for whole exome sequencing. You can view our articleBioinformatics Workflow for Whole Exome Sequencing. The bioinformatics workflow for WGS falls into the following steps: (...
Comprehensive analysis of poly(A) tails in mouse testes and ovaries using Nanopore Direct RNA Sequencing Agnieszka Czarnocka-Cieciura Michał Brouze Andrzej Dziembowski ResearchOpen Access10 Jan 2025Scientific Data Volume: 12, P: 43 Development of a novel multi-epitope subunit mRNA vaccine candida...
Nanoflow: a NANOpore sequencing data bioinformatics workFLOW Nanoflow is a pipeline written in snakemake to automate many of the steps of quality control, de novo assemblies and genome annotation in whole genome sequencing analysis, using Oxford Nanopore sequencing data. 20190104: add github page Inst...
Next Generation Sequencing reveals transcriptional analysis of Masson Pine (Pinus massoniana) under High CO2 Stress Next Generation 16s rRNA analysis assessing Potentially Active Bacteria and Foodborne Pathogens. Human Chromosome Y Sequence Assembly using Oxford Nanopore Reads ...
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Lefser: Implementation of metagenomic biomarker discovery tool, LEfSe, in R –Asya Khleborodova – Bioinformatics TechniqueEvaluation of DNA extraction kits for long-read shotgun metagenomics using Oxford Nanopore sequencing for rapid taxonomic and antimicrobial resistance detection –Srinithi Purushothaman...