一、介绍 1.BioCyc BioCyc是代谢途径的数据库集合,集合中的每个数据库描述了单个生物体的基因组和代谢途径(MetaCyc是来自代谢途径的参考来源),包括反应、酶、基因和底物化合物。第一层数据库包含EcoCyc、MetaCyc和BOCD,第二层和第三层数据库则包含了计算预测代谢通路,以及哪些基因编码代谢通路中缺少酶的预测和预测...
BioCyc数据库是一款集物种基因组、通路信息及组学分析的功能数据库。涵盖EcoCyc大肠杆菌数据库、MetaCyc生物代谢路径数据库等,比较分析工具包括Genome informatics tools、Pathway informatics tools、Omics data analysis。该库集合了19000 多个测序生...
BioCyc key features Over 20,000 organism-centric databases covering all domains of life; those of many models and highly studied organisms have been curated with data from over 130,000 publications. Each database contains the annotated genome of the organism, its metabolic pathways, plus other in...
第3层:PathoLogic通过计算预测得出的数据库,并未进行过校验与更新,包含7625个 PGDBs。3、BioCyc提供了用于导航,可视化和分析基础数据库以及分析组学数据的工具:基因组浏览器;单个代谢途径和完整代谢图可视化;提供单组学和多组学数据集的多种组学数据分析方法,包括...
The BioCyc app provides mobile access to the BioCyc collection of 14,000+ pathway/genome databases, including MetaCyc, HumanCyc, YeastCyc, and many more. The B…
BioCyc.org provides 20,000 Pathway/Genome databases for sequenced microbes that describe their reconstructed metabolic networks. The MetaCyc DB provides a universal encyclopedia of metabolism across all domains of life. BioCyc computational tools provide search, comparison, a...
【BioCyc使用的新帮手:MORS】 http://t.cn/Ai1tAdnx ① 配合BioCyc使用的MORS软件可利用指定的跨多物种的起始和终止代谢物,模拟出可能的代谢途径,帮助了解菌群的总代谢能力及代谢路径;② MORS允许使用者输入一...
BioCyc 系统标签: biocyctutorialpgdbssribioinformaticspgdb 1SRIInternationalBioinformaticsBioCycTutorialPeterD.Karp,Ph.D.BioinformaticsResearchGroupSRIInternationalpkarp@ai.sriBioCycEcoCyc,MetaCyc,HumanCychttp://.ai.sri/pkarp/talks/biocyc-tutorial.ppt2SRIInternationalBioinformaticsARoadmaptoBioCyc BioCycContent...
Summary: We describe multiple methods for accessing and querying the complex and integrated cellular data in the BioCyc family of databases: access through... M Krummenacker,S Paley,L Mueller,... - 《Bioinformatics》 被引量: 194发表: 2005年 KEGGanim: pathway animations for high-throughput data...
The Metabolic Network Explorer is a new addition to the BioCyc.org website and the Pathway Tools software suite that supports the interactive exploration of metabolic networks.