install.packages("BiocManager", dependencies=TRUE) 或者,如果你使用的是较新版本的R和Bioconductor,可能需要更新你的Bioconductor安装: R if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install() 查阅官方文档或社区帮助: 如果问题依旧存在,建议查阅R的官方...
install.packages("BiocManager", dependencies = TRUE, type = "source") and: devtools::install_git("https://github.com/Bioconductor/BiocManager.git") but when I run: BiocManager::install() I get the following: Bioconductor version 3.8 (BiocManager 1.30.5), ?BiocManager::install for help Biocond...
3、devtools::install_github 4、 remotes::install_github 5、MetaboAnalystR 参考 一、安装R包的几种方法 1、直接安装 (1)对于一般的R包 install.packages("package name") (2)对于Bioconductor的包(使用BiocManager安装) if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager"...
Reported via email .libPaths(tempfile()) BiocManager::install('phangorn') # installs phangorn So far so good, but > BiocManager::install('phangorn', dependencies = TRUE) Bioconductor version 3.17 (BiocManager 1.30.20), R Under developmen...
Unless I've missed something, you have to use an alternative like devtools::install('.', dependencies=TRUE, build_vignettes=TRUE, repos = BiocManager::repositories()) to install a local package normally or in Dockerfiles, taking us away from BiocManager as our one-and-only package manager. ...
BiocManager does not respectdependencies = TRUEwhen the non-Suggests packages have already been installed #161 openedMar 17, 2023bymtmorgan BiocManager::valid() does not check for 'missing' dependencies #154 openedJan 24, 2023bymtmorgan
BiocManager::install for help Bioconductor version 3.13 (BiocManager 1.30.13), R 4.1.0 alpha (2021-04-26 r80229) Installing package(s) 'SpatialExperiment' also installing the dependencies 'sitmo', 'dqrng', 'scuttle', 'DropletUtils', 'magick' Old packages: 'rsvg', 'V8' Update all/some/...
I am able to install all the dependencies, but still get the error. Here is the full output of my attempt to install SingleR. At the end is the session info: BiocManager::install("SingleR") 'getOption("repos")' replaces Bioconductor standard repositories, see ...