However, when original data providers such as Uniprot provide their own RDF they will rightfully use URIs that resolve to their servers, but what should they do for externally defined entities? If they follow in Bio2RDF's footsteps then every data provider will use a different URI. However, ...
Bio2RDF Release 3 (July 2014) Release Notes: ~11 billion triples across35 datasets new datasets include: clinicaltrials.gov, dbSNP, GenAge, GenDR, LSR, OrphaNet, PubMed, SIDER, WormBase) locally hosted endpoints: chembl, linkedSPL, pathwaycommons, reactome, wikipathways ...
With Bio2RDF, documents from public bioinformatics databases such as Kegg, PDB, MGI, HGNC and several of NCBI’s databases can now be made available in RDF format through a unique URL in the form of http://bio2rdf.org/namespace:id. The Bio2RDF project has successfully applied the ...
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【摘要】文章分析关联数据在实现科学数据集成与共享中的优势，并阐述国内外关联数据在科学数据领域的进展。以Bio2ＲDF 项目为例，探究利用关联数据技术实现科学数据集成与共享的方法与机制，包括UＲI 命名与复用、ＲDF 语义链接和数据的获取与共享。【关键词】科学数据集成数据共享关联数据 Abstract ：This paper ...
Bio2RDF 来自 ACM 喜欢 0 阅读量: 70 作者: Franois Belleau,Marc Alexandre Nolin,Nicole Tourigny,Philippe Rigault,Jean Morissette 摘要: Presently, there are numerous bioinformatics databases available on different websites. Although RDF was proposed as a standard format for the web, these ...
Requests sent to bio2rdf.org are answered by a subscribing mirror through a DNS round-robin strategy (Figure 1). While this does not guarantee equality in load bearing among the mirrors, it effectively distributes incoming queries to reduce the load on each mirror. ...
This heterogeneity presents an overwhelming barrier to the discovery and reuse of resources which have been developed at great public expense.To address this issue, the open-source Bio2RDF project promotes a simple convention to integrate diverse biological data using Semantic Web technologies. However...
We have created a single repository called Chem2Bio2RDF by aggregating data from multiple chemogenomics repositories that is cross-linked into Bio2RDF and LODD. We have also created a linked-path generation tool to facilitate SPARQL query generation, and have created extended SPARQL functions to ad...
The Chem2Bio2RDF portal is a Linked Open Data (LOD) portal for systems chemical biology aiming for facilitating drug discovery. It converts around 25 different datasets on genes, compounds, drugs, pathways, side effects, diseases, and MEDLINE/PubMed docu