The ASV table of the full dataset was converted into putative functions table via cross-annotation against the Faprotax database53(https://pages.uoregon.edu/slouca/LoucaLab/archive/FAPROTAX/lib/php/index.php). The PCA ordination revealed three main clusters of putative functions patterns: one ...
Development of the technology of third-generation sequencing has speeded the progress of genome projects concerned byA. oryzae, thanks to the long reads ability of this technology, which can improve genome annotation quality by reducing genome errors in assembly. Till now, the whole genome of about...
Database for Annotation, Visualization and Integrated Discovery; B-H: Benjamini–Hochberg method; STRING: The Search Tool for the Retrieval of Interacting Genes; PPI: Protein-protein interaction; NES: Normalized enriched score; FDR: False discovery rate; qPCR: Quantitative real-time PCR; log2FC: ...
this does not necessarily mean that cathode potential does not affect gene expression inMethanobacteriumsp. strain 34x. The lack of significant changes may have been due to the presence of H2-limited conditions even during the − 1.0 V operation....
BUSCO: Assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 2015, 31, 3210–3212. [CrossRef] 76. Mikheenko, A.; Prjibelski, A.; Saveliev, V.; Antipov, D.; Gurevich, A. Versatile genome assembly evaluation with QUAST-LG. Bioinformatics 2018, 34,...
sibiricum transcriptome library and the reliability of the annotation process. Overall, 12,175 (16.42%) unigenes were assigned to 25 COG categories (Figure 3C). Among these, the most numerous were unigenes belonging to the "General function prediction only" (2965, or 24.35% of the total), ...
(CWS) and challenged with WSSV (BFT.W and CWS.W), Table S3: Shared and unique OTUs annotation from Litopenaeus vannamei midgut reared in bioflocs (BFT) and clear seawater (CWS) and challenged with WSSV (BFT.W and CWS.W), and the abundance of unique OTUs annotation from major bacterial...
Insights from the genome annotation of Elizabethkingia anophelis from the malaria vector Anopheles gambiae. PLoS ONE 2014, 9, e97715. [CrossRef] [PubMed] 17. Lawniczak, M.K.; Emrich, S.J.; Holloway, A.K.; Regier, A.P.; Olson, M.; White, B.; Redmond, S.; Fulton, L.; ...
According to the results from GO annotation and cluster analysis, the following six results related to neuroprotective function (inhibitory postsynaptic potential, cellular response to hydrogen peroxide, chemical synaptic transmission, inflammatory response, adult locomotory behavior, and axonogenesis) were ...