针对组学原始数据存储归,BIGD建立了子库GSA(Genome Sequence Archive,http://bigd.big.ac.cn/gsa/),相当于NCBI 的SRA和EBI的ENA。GSA专注于组学原始数据收集与整合,并提供免费的数据存储、共享与访问服务。GSA的系统建设遵循了国际核酸序列共享联盟(International Nucleotide Sequence Database Collaboration, INSDC)的...
GSA and BIGD: Filling the Gap of Bioinformatics Resource and Service in ChinaIn the 2017 first issue of this Journal–Genomes,Proteomes and Bioinformatics–a special database article entitled''GSA:Genome Sequence Archive"[1]is published.This article provides a brief introduction to the...
For example, persons who developed the CODIS DNA identification system relieved forensic analysts from the prodigious task of comparing and storing, for each sampled individual, the 3 billion base pairs that span the length of the human genome. Instead, a selection of 13 short sequences can ...
Toward this end, we transformed public datasets from 38,088 experiments, including genome-scale expression, physical interaction, and sequence studies, into an integrated map of immunological relationships among molecular entities. The resulting comprehensive web-accessible resource (ImmuNet) facilitates ...
high-throughput sequencing experiments, the data are archived in the Sequence Read Archive (SRA). SRA was established to provide a public archive of high-throughput sequencing data in conjunction with GEO19. As of January 2024, SRA has hosted more than 10.9 million publicly available RNA ...
Archive for the ‘Big Data & Analytics’ Category Live Notes from JP Morgan Healthcare Conference Virtual Endpoints Preview: January 8-9 2024 Posted in Artificial Intelligence - Breakthroughs in Theories and Technologies, Artificial Intelligence - General, Artificial Intelligence Applications in Health ...
aligning with a human template with an E-value of 1 E−10. The miRNA and snRNA sequences were identified using INFERNAL32by searching against the Rfam database. We identified a total of 409 rRNA, 2,089 tRNA, 16,050 miRNA, and 629 snRNA genes in the big-headed turtle genome (Table9...
Services like Cancer Genomics Hub (Wilks et al, 2014), the Database of Genotypes and Phenotypes (NIH, 2007), the European Genome Archive (Lappalainen et al, 2015) and the European Nucleotide Archive (Leinonen et al, 2011), allow users to access, query and download regions of interest ...
Although a standard genomic microarray may profile a genome for hundreds to thousands of features per sample, current next-generation sequencers can produce over 100 GB of raw sequence reads per genome. These data, coupled with a plethora of clinical and phenotypic attributes, have the potential ...
The problem of the sequence pattern mining can be defined by means of a sequence database D and annotated with a time stamp for each item in each sequence determining the order of the elements. A sequence e = < t1, t2,… , tl > is an ordered list of itemsets, where tp ⊆I...