Move <zlib.h> include out of the public bgzf.h header #963 Merged valeriuo merged 1 commit into samtools:develop from jmarshall:reduce-zlib-header Nov 1, 2019 Merged Move <zlib.h> include out of the public bgzf.h header #963 valeriuo merged 1 commit into samtools:develop from ...
block to 2^16 bytes and adds and an extra "BC" field in the gzip header which records the size. */ static const uint8_t g_magic[19] = "\037\213\010\4\0\0\0\0\0\377\6\0\102\103\2\0\0\0"; #ifdef BGZF_CACHE typedef struct { int size; uint8_t *block; int...
block to 2^16 bytes and adds and an extra "BC" field in the gzip header which records the size. */ static const uint8_t g_magic[19] = "\037\213\010\4\0\0\0\0\0\377\6\0\102\103\2\0\0\0"; #ifdef BGZF_CACHE typedef struct { int size; uint8_t *block; int...
New -r (reheader) option for efficient header replacement. pd3committedFeb 24, 2011 87fe9cd Commits on Aug 24, 2010 Complain about not-bgzipped files and check for noncontinuous chromosome blocks pd3committedAug 24, 2010 7ef2e34 Commits on Nov 1, 2009 initial source code. It is ...
// write the header memcpy(dst, g_magic, BLOCK_HEADER_LENGTH); // the last two bytes are a place holder for the length of the block packInt16(&dst[16], *dlen - 1); // write the compressed length; -1 to fit 2 bytes // write the footer ...
#define BGZF_ERR_HEADER 2 #define BGZF_ERR_IO 4 #define BGZF_ERR_MISUSE 8 typedef struct { int open_mode:8, compress_level:8, errcode:16; int cache_size; int block_length, block_offset; int64_t block_address; void *uncompressed_block, *compressed_block; void *cache; /...
SwissProt TogoWS UniGene UniProt Wise _py3k codonalign motifs phenotype File.py Index.py LogisticRegression.py MarkovModel.py MaxEntropy.py NaiveBayes.py Seq.py SeqFeature.py SeqRecord.py __init__.py _utils.py bgzf.py cpairwise2module.c ...