track type=bedGraph name="BedGraph Format"description="BedGraph format"visibility=full color=200,100,0altColor=0,100,200priority=20chr194930200049302300-1.0chr194930230049302600-0.75chr194930260049302900-0.50chr194930290049303200-0.25chr1949303200493035000.0chr1949303500493038000.25chr1949303800493041000.50chr1949304100493044000.75chr1949304400493047001.00 2...
ThebedGraphformat is a very similar format forsparsedata or data that contains elements of varying size. bedGraph can also be converted to compressed/indexed binary bigWig files. If you have other data to show in addition to the quantitative data, e.g. data you want to show on mouseover o...
1. bedGraph转bed文件 BedGraph ,的数据和bed文件很类似,ChIPseq数据做完peak calling后的bed文件最短只有三列,染色体序号,染色体起始位置和结束位置。如下所示,前面的声明和Wig类似,后面的四列分别表示染色体序号,起始位置,结束位置和value值。相当于为bed文件的延伸格式。 track type=bedGraph name="BedGraph Format"...
Wiggle data must be continuous and consist of equally sized elements. If your data is sparse or contains elements of varying sizes, use thebedGraphformat instead of the wiggle format. If you have a very large bedGraph data set, you can convert it to the bigWig format using thebedGraphToBig...
标准输入文件: 一定长度为bins 的count 数统计文件(类似bedgraph格式) 假设你手里有ChIP-seq测序结果的bed 文件,如何得到等bin区间的bedgraph 结果呢。 你可以选择bed 转成bam再转成bedgraph: 工具列表 bedtools bedToBam ;deeptools bamCoverage . 但是你是否想过这样得到的结果,也就是bedgraph 文件存在一个问题,...