Rename the short option-e, --error-probabilityfrom lower case to upper case-E, --error-probability Changes to the output format, replace the DC section with DCv2: adds a new column for the number of matching genotypes The--error-probabilityis newly interpreted as the probability of erroneous...
case 11 : args->rename_annots = optarg; break; case 12 : args->min_overlap_str = optarg; break; case 13 : case 'W': if (!(args->write_index = write_index_parse(optarg))) error("Unsupported index format '%s'\n", optarg); break;8...
Can be used, for example, to concatenate chromosome VCFs into one VCF, or combine a SNP VCF and an indel VCF into one. The input files must be sorted by chr and position. The files must be given in the correct order to produce sorted VCF on output unless the *-a, --allow-...
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