问多等位位点的更好的分裂比bcftools范数-m-anyEN版权声明：本文内容由互联网用户自发贡献，该文观点仅...
bcftools norm -m -any And check for duplicate CHROM, POS, REF, ALT I will try this and report back Author eturro commented Dec 2, 2014 Even with the above attempted workaround, I still get duplicate records. Here is a quasi-minimal example: $ bcftools view -H file1.vcf.gz 1 13946...
bcftools norm: atomization now supportsNumber=A,Rstring annotations (#1503) assign as many alternate alleles to genotypes at multiallelic sites in the-m +mode, disregarding the phase. Previously the program assumed to be executed as an inverse operation of-m -, but when that was not the case...
static inline double norm_prob(double baf, gauss_param_t *param) { return exp(-(baf-param->mean)*(baf-param->mean)*0.5/param->dev2) / param->norm / sqrt(2*M_PI*param->dev2); } static int set_observed_prob(args_t *args, sample_t *smpl, int isite) { float baf ...
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som_norm_counts(args->som[i]); if ( args->prefix ) { char *bname = msprintf("%s.som.%d", args->prefix,i); som_create_plot(args->som[i], bname); free(bname); } }// evaluate float *good = (float*) malloc(sizeof(float)*ngood); assert(good); ...
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vcfnorm.o: vcfnorm.c $(htslib_vcf_h) $(htslib_synced_bcf_reader_h) $(htslib_faidx_h) $(htslib_khash_str2int_h) $(bcftools_h) rbuf.h vcfquery.o: vcfquery.c $(htslib_vcf_h) $(htslib_synced_bcf_reader_h) $(htslib_khash_str2int_h) $(htslib_vcfutils_h) $(bcftools_h) $(...
vcfnorm.c.pysam.c vcfplugin.c vcfplugin.c.pysam.c vcfquery.c vcfquery.c.pysam.c vcfroh.c vcfroh.c.pysam.c vcfsom.c vcfsom.c.pysam.c vcfsort.c vcfsort.c.pysam.c vcfstats.c vcfstats.c.pysam.c vcfview.c vcfview.c.pysam.c vcmp.c vcmp.c.pysam.c vcmp.h version.c ve...
Actions Automate any workflow Codespaces Instant dev environments Issues Plan and track work Code Review Manage code changes Discussions Collaborate outside of code Code Search Find more, search less Explore All features Documentation GitHub Skills Blog Solutions By company size Enterpr...