bcbio-nextgen 对比 概览 概览 百分制 分布图 全屏 生产力 创新力 稳健性 协作 贡献者 软件 项目深度洞察 查看洞察详情 贡献者 27 贡献者数量 lpantano Top 贡献者 8 贡献组织数量 @acidgenomics Top 贡献组织 Issue 5 新建Issue 数量 20% (1) Issue 解决百分比 0 未响应 Issues 数量 1 平均评论数量 Pul...
随着命令的执行,bcbio-nextgen会自动管理所有中间步骤,包括质量控制、比对、重复标记去除、变体调用等,直至生成最终的分析报告。 2.3 示例二:常见问题及解决方案 尽管bcbio-nextgen在设计上力求简化用户的使用体验,但在实际操作过程中,仍可能会遇到一些挑战。例如,当处理非常大的数据集时,可能会出现内存不足的问题。此时...
wget https://raw.githubusercontent.com/bcbio/bcbio-nextgen/master/scripts/bcbio_nextgen_install.py python bcbio_nextgen_install.py /usr/local/share/bcbio --tooldir=/usr/local \ --genomes hg38 --aligners bwa --aligners bowtie2 producing an editablesystem configuration filereferencing the install...
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此仓库是为了提升国内下载速度的镜像仓库,每日同步一次。 原始仓库:https://github.com/chapmanb/bcbio-nextgen master 克隆/下载 git config --global user.name userName git config --global user.email userEmail 分支5 标签65 Meeta MistryCreate chip.md855c7ae8个月前 ...
Here, we evaluated the analytical performance of the bcbio-nextgen pipeline for WES for Illumina NextSeq500. We compared the performance of the bcbio-nextgen pipeline with the performance of other WES-based pipelines reported in literature. Our comparative analyses showed that the sensitivity and ...
Characterization of the small RNA transcriptome using the bcbio-nextgen python frameworkdoi:10.7490/F1000RESEARCH.1112526.1L. RubioB. ChapmanRory KirchnerJohn W. HutchinsonOliver M. HofmannShannon Ho SuiF1000Research
Hi Brad, I am trying to use bcbio-nextgen to analysis whole-exome seq data. However, an error stopped the process, the detailed info is: [2014-09-02 22:42] Finalizing variant calls: C3, freebayes [2014-09-02 22:42] Calculating variation ...
Creating manifest of installed packages in /opt/pipelines/bcbio/manifest Third party tools upgrade complete. Installing additional tools Upgrading bcbio-nextgen data files Setting up virtual machine [localhost] local: echo $HOME [localhost] local: uname -m ...
Hi Brad, Recently, I installed bcbio_nextgen in our cluster system and tried to analysis the DNA-seq (whole exome), I tested 10 samples with: bcbio_nextgen.py ../config/YHY_WE.yaml -t ipython -s torque -n 320 -q high -r account=YHY --tag...