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Why GitHub? Team Enterprise Explore Marketplace Pricing Sign inSign up BioInfoTools/BBMap Watch12 Star89 Fork58 Code Issues22 Pull requests1 Actions Projects Security Insights More master BBMap/sh/bbest.sh Go to file Copy path executable file68 lines (56 sloc)1.57 KB ...
Why GitHub? Team Enterprise Explore Marketplace Pricing Sign inSign up BioInfoTools/BBMap Watch12 Star89 Fork58 Code Issues22 Pull requests1 Actions Projects Security Insights More master BBMap/sh/reducesilva.sh Go to file Copy path executable file73 lines (56 sloc)1.87 KB ...
any problems, or post at: http://seqanswers.com/forums/showthread.php?t=41057 " } #This block allows symlinked shellscripts to correctly set classpath. pushd.>/dev/null DIR="${BASH_SOURCE[0]}" while[-h"$DIR"];do cd"$(dirname"$DIR")" ...
Why GitHub? Team Enterprise Explore Marketplace Pricing Sign inSign up BioInfoTools/BBMap Watch12 Star89 Fork58 Code Issues22 Pull requests1 Actions Projects Security Insights More master BBMap/sh/muxbyname.sh Go to file Copy path executable file80 lines (64 sloc)2.04 KB ...
Description: Creates a ROC curve from a sam file of synthetic reads with headers generated by RandomReads3.javaUsage: samtoroc.sh in=<sam file> reads=<number of reads in input fastq>Parameters: in=<file> Specify the input sam file, or stdin....
(Not Offical) BBMap short read aligner for DNA/RNAseq, and other bioinformatic tools. BBTools bioinformatics tools, including BBMap. I have moved those dozens of shell scripts from root to ./sh/ to make it tidy. SEQanswers Page SourceForge Page BBMap/BBTools are now open source. Please try...
Add asection like this: build: while replacing"myrecipe"with eithernameif aname|lowervariable is defined in your recipe or with the lowercase name of the package in quotes. Bot commands for PR management
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> Co-authored-by: Simon Pearce <24893913+SPPearce@users.noreply.github.com> Co-authored-by: Fabian Egli <fabianegli@users.noreply.github.com> Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github....
BBMap/sh/countsharedlines.sh Go to file Copy path Cannot retrieve contributors at this time executable file76 lines (63 sloc)2.09 KB RawBlame #!/bin/bash usage(){ echo" Written by Brian Bushnell Last modified September 15, 2015 Description: Counts the number of lines shared between sets of...