Figure 3 Flow chart of receiver operating characteristic (ROC) analysis.\(S_{{\nu_{bm} }}^{D}\)and\(S_{{\nu_{bm} }}^{0}\)are the SERS signals at the Raman shift of the biomarker peak,\(\nu_{{{\text{bm}}}\), with and without antibiotic treatment, respectively.\(\nu_{{...
PMR was diagnosed based on the results of 2012 EULAR/ACR provisional classification criteria29. Study design This was an observational, case–control cross-sectional study of patients with RA and PMR. The titers of ACPA were measured using Architect Anti-CCP (Abbott Japan LLC, Tokyo). The ...
Based on this classification scheme, we found that conserved proteins (class D) were 1.6 sigma more abundant than genus-specific proteins (class G) (Fig. 2J and Supplemental Fig. S4F). Interestingly, class D proteins contributed over 60% to a bacterium's overall protein intensity (Fig. 2k...
B Enrichment of DAMs in KEGG compound classification. C Enrichment of DAMs in KEGG pathway. D KEGG topology analysis of enrichment to metabolic pathways of DAMs Full size image Table 1 The expression of representative differentially accumulated metabolites Full size table To investigate the phosphorus-...
The initial grouping of the trGTPases into nine subfamilies was dependent on the initial tree, which was created from a smaller subset of proteins and contained some non-functional proteins. Thus, we decided to confirm the classification of trGTPases again, (a) by dividing proteins among 9...
Function annotation (ARGs and VFs), plasmid classification and typing, and novel plasmid identification ARG profiles of the genomes and plasmids were identified by BLASTP against the SARG database atEvalue ≤ 10-7with a minimum similarity of 80% over 70% query coverage [23], and VFs were ann...
All identified metabolites were classified into three categories as follows: compounds with biological roles (the largest num- ber of metabolites in this classification were organic acids in ESI− and benzene and derivatives in ESI+); phytochemi- cal compounds (the largest number of metabolites ...
A supervised OPLS-DA was applied to obtain a high level of group separation and classification. Variable importance in the projection (VIP) were calculated in OPLS-DA model. P-values were estimated with paired Student’s t test on Single dimensional statistical analysis. The significantly different...
Such classification may only be obtained through a detailed review of all studies reporting both intraoperative cfu/m3 levels in operating rooms and containing descriptive information on operating room ventilation systems. However, the lack of an internationally agreed standard for microbial air quality ...
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