The average amino acid identity (AAI) is an index of pairwise genomic relatedness, and multiple studies have proposed its application in prokaryotic taxonomy and related disciplines. AAI demonstrates better resolution in elucidating taxonomic structure beyond the species rank when compared with average ...
Accurate: Uses MMseqs2 to ensure accurate calculation of average nucleotide identity (ANI) and alignment fraction (AF). Comprehensive: Provides analysis at both nucleotide and amino-acid level. User-friendly: Easy-to-use Snakemake workflow. Reproducible: Conda-based installation support ensures reproduci...
Percent average amino acid identities (AAI) calculated from the core genome data set using EDGAR and MUMi scores of genomic distance between the 12 E. amylovora strains and closely related Erwinia ...