Abstract. ATTED-II (http://atted.jp) is a database of coexpressed genes that was originally developed to identify functionally related genes in Arabidopsis
ATTED-II (http://atted.jp) is a coexpression database for plant species to aid in the discovery of relationships of unknown genes within a species. As an advanced coexpression analysis method, multispecies comparisons have the potential to detect alterations in gene relationships within an evolu...
ATTED-II (http://atted.jp) is a database of coexpressed genes that was originally developed to identify functionally related genes in Arabidopsis and rice. Herein, we describe an updated version of ATTED-II, which expands this resource to include additional agriculturally important plants. To ...
Obayashi, ATTED-II in 2016: a plant coexpression database towards lineage-specific coexpression, Plant Cell Physiol. 57 (2016) e5.Aoki Y, Okamura Y, Tadaka S, Kinoshita K, Obayashi T. ATTED-II in 2016: a plant Coexpression database towards lineage-specific Coexpression. Plant Cell ...
ATTED-II (http://atted.jp) is a gene coexpression database for a wide variety of experimental designs, such as prioritizations of genes for functional identification and analyses of the regulatory relationships among genes. Here, we report updates of ATTED-II focusing on two new features: ...
Thus, we adopted a bioinformatic approach, using the publicly available Arabidopsis thaliana trans-factor and ciselement prediction database, ATTED-II (http://atted.jp/), to identify putative protein interactors. The proteins directly linked to CPSAR1 were almost exclusively nucleus encoded and ...
In this review, we will summarize recent successful examples obtained by using our gene coexpression database, ATTED-II. Specifically, the examples will describe the identification of new genes, such as the subunits of a complex protein, the enzymes in a metabolic pathway and transporters. In ...