For deconvolution and cell type annotation, single-cell RNA sequencing and ST data were integrated via the 'CARD' (v 1.1) [27] package with default settings. Initially, a 'CARD' object was created with the CreateCARDObject function, and the results were computed using CARD_deconvolution with ...
(c–f) The heatmaps, supervised on the sample axis, depict the protein levels of the pathway members and of proteins with a high correlation (r 40.3/ro À 0.3, Spearman's correlation) to the pathway predictor across RBN clusters (c,d) and tumour lineages (e,f). The EMT pathway (...
The purple line indicates the normalized mean intensity, whose Y axis on the left. Histograms of nbM voxels in both horizontal (Left) and vertical (Right) direction of the zoomed view were shown in grey. Abbreviations: nbM: nucleus basalis of Meynert; ac: anterior commissure; Gpi: internal ...
2. If positive, pubmed was searched for < CCLE/GDSC cell line name > + <synerg*> (the wild card * ensures that both synergy and synergistic are found). 3. For each positive case, the PDF manuscript was checked whether the cell line(s) used was correct and which method was use...
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