Galaxy training walkthrough of generalized ATAC-seq analysis. https://galaxyproject.github.io/training-material/topics/epigenetics/tutorials/atac-seq/tutorial.html ATAC-seq 原始数据处理 Pipelines 软件名 Language Notes Docs Citation AIAP Bash; R; Python ...
ATAC-seq方法是 2013 年由斯坦福大学的 William J. Greenleaf 和 Howard Y. Chang 实验室共同开发的用于研究染色质可及性/开放性的方法。第一个scATAC-seq数据是 2015 年由Greenleaf(Buenrostro, Wu et al. 2015)和Shendure(Cusanovich, Daza et al. 2015)实验室的分别发布Nature和Science期刊上,他们通过修改ATA...
https://github.com/harvardinformatics/ATAC-seq ATAC-seq data analysis Delisle L; Doyle M; & Heyl F,Last updated: 2020 Galaxy training walkthrough of generalized ATAC-seq analysis. https://galaxyproject.github.io/training-material/topics/epigenetics/tutorials/atac-seq/tutorial.html ...
ATAC-seq及Hi-C互作探究的正是染色体的结构变化。通过联合三个组学有助于解析染色质开放性变化及三维空...
https://yiweiniu.github.io/blog/2019/03/ATAC-seq-data-analysis-from-FASTQ-to-peaks/A similar github page presenting an ATAC-seq pipeline https://galaxyproject.github.io/training-material/topics/epigenetics/tutorials/atac-seq/tutorial.html
Tutorial.md base.txt fragDist.png junction.png venn.png README GPL-3.0 license ATACgraph ATACgraph is a simple and effective software for the analysis of ATAC-Seq data. It contains 12 analyses to profile (epi)genome. Citations If you use ATACgraph for your analysis, please cite it using...
这个软件于2021年2月25号发表在Nature Genetics 杂志上,文献标题为《ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis》。作者认为 ArchR 是目前最全面且用户友好的单细胞ATAC-seq和多组学数据分析工具。开发团队将继续改进和扩展ArchR的功能,以保持其在该领域的领先地位...
4]https://training.galaxyproject.org/training-material/topics/epigenetics/tutorials/atac-seq/tutorial...
https://github.com/harvardinformatics/ATAC-seq ATAC-seq data analysis Delisle L; Doyle M; & Heyl F,Last updated: 2020 Galaxy training walkthrough of generalized ATAC-seq analysis. https://galaxyproject./training-material/topics/epigenetics/tutorials/atac-seq/tutorial.html ATAC-seq 原始数据处理 Pi...
ChIP-Seq一般是一次探究一个转录因子, 所以结果里有一个明显的peak, 而ATAC-Seq是探究开放的染色质区域...