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#Download Unicycler test data#input: nothing#output: 0_pe.fq.gz#install dependenciesbrew install seqtk curl seqtk mergepe<(curl -Ls https://github.com/rrwick/Unicycler/raw/master/sample_data/short_reads_1.fastq.gz)<(curl -Ls https://github.com/rrwick/Unicycler/raw/master/sample_data/short...
Source code for all methods used is available at [54] and archived in Zenodo under [50]. All used assembly tools are hosted on GitHub (Table4) and are encapsulated in docker containers. That docker containers are published on dockerhub [55] and are named with a leadingbenchmark_(Additional...
就说明我们通过了lab1的所有实验。 本人的实验代码已经上传github,欢迎关注https://github.com/gatsbyd/mit_6.828_jos 如有错误,欢迎指正: 15313676365 参考资料 《x86汇编语言-从实模式到保护模式》 《程序员的自我修养》
https://github.com/Jaiswal-lab/Transcriptome_Assembly_Scripts The high quality transcriptome assemblies will reduce bias and erroneous results when the assembly is used in downstream analyses such as identification of differentially expressed transcripts, or for mining potential genetic markers (e.g.simple...
Mabs is useful for making high-quality genome assemblies. It is available athttps://github.com/shelkmike/Mabs Background In recent years, sequencing technologies have improved significantly. Reads of Oxford Nanopore Technologies have become longer and more accurate [1], as have HiFi reads of Pac...
A disadvantage of using large k-mer sizes is the lower genome coverage (Fig.1b) as a consequence of sequencing errors, resulting in random coverage gaps. To overcome this drawback, we adopted the iterative multi-k-mer approach of the GATB-Minia pipeline (https://github.com/GATB/gatb-minia...
Sarađujte sa nama na GitHub-u Izvor za ovaj sadržaj možete da pronađete u usluzi GitHub, gde možete i da kreirate i pregledate probleme i povučete zahteve. Više informacija potražite u našem vodiču za saradnike. Povratne informacije za .NET .NET...
(https://github.com/nanoporetech/medaka), which are most frequently used as standards for Nanopore-based polishing, as well as various polishing tools such as Nextpolish5, PEPPER6, Apollo7, Homopolish8, and NeuralPolish9, recently developed in the last 1–2 years are available. These ...
A disadvantage of using large k-mer sizes is the lower genome coverage (Fig.1b) as a consequence of sequencing errors, resulting in random coverage gaps. To overcome this drawback, we adopted the iterative multi-k-mer approach of the GATB-Minia pipeline (https://github.com/GATB/gatb-minia...