A phylogenetic tree was produced using qiime phylogeny align-to-tree-mafft-fasttree and the reads were aligned using a trained silva classifier using qiime feature-classifier classify-sklearn. QIIME2 artifacts were downstream processed using a custom R script keeping only samples with more than 1000...
The main object in this package is the gapminder data frame or “tibble”. There are other goodies, such as the data in tab delimited form, a larger unfiltered dataset, premade color schemes for the countries and continents, and ISO 3166-1 country codes. The primary use case is for ...
(Harrell,2019), apaTables (Stanley,2021), rio (Chan et al.,2018), lmBeta (Behrendt,2014), magrittr (Bache et al.,2020), Stargazer (Hlavac,2018), tibble (Müller et al.,2021), car (Fox & Weisberg,2019), Foreign (R Core Team et al.,2022), MASS (Ripley et al.,2022), and ...
[97] tibble_3.1.5 stringi_1.7.5 GenomicFeatures_1.44.2 [100] lattice_0.20-45 Matrix_1.4-0 nloptr_1.2.2.3 [103] vegan_2.5-7 permute_0.9-5 vctrs_0.3.8 [106] pillar_1.6.4 lifecycle_1.0.1 BiocManager_1.30.16 [109] GSA_1.03.1 data.table_1.14.2 bitops_1.0-7 [112] R6_2.5.1 Bio...
The use of the prefixed "TBL_" is a design error so bad it has a name; it's called the tibble. This is not a design error. It does not violate the normal forms. I might have preferred tblNameOfTable rather than TBL_NameOfTable. So-called tibbling helps avoi...
tibble v3.1.8 R package tidyr v1.3.0 R package vegan v2.6-4 PICRUSt2 v2.4.2 EPA-NG v0.3.8 Gappa v0.7.0 SEPP v4.3.10 Castor v1.7.3 FlowJo v10.8.1 Graphpad Prism v9.4.1 Deposited data 16S-rRNA amplicon sequencing data Pacbio StrainID amplicon sequencing data Other Anaerobic ...