We have probably developed the most comprehensive database of Arabidopsis transcription factors (DATF). The DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure...
a database for the identification and analysis of transcription factor binding sites in the Arabidopsis thaliana genome - Hehl () Citation Context ... that are members of the same family. The data content and the use of the database is described online and in the respective publications. ...
Even thoughin vivotranscriptional regulation often involves the concerted action of more than one transcription factor, the format of each individual ChIP-Seq dataset usually represents the action of a single transcription factor. Therefore, a relational database in which available ChIP-Seq datasets are...
An automated pipeline for analyzing arabidopsis luciferase imaging data arabidopsisluciferase UpdatedOct 3, 2023 Python 🌱🧬 Collection of scripts for the paper: "PAMP-triggered genetic reprogramming involves widespread alternative transcription initiation and an immediate transcription factor wave" (The Pla...
402 of 1461 DEGs mapped onto the KEGG database forArabidopsis(Supplementary Fig.S4a) and 5 terms were significantly enriched (CorrectedP-value < 0.05). Similarly, at 100 mM NaCl, 353 of 1288 DEGs mapped onto the KEGG database forArabidopsis(Supplementary Fig.S4b) and six terms were ...
The Complete Arabidopsis Transcriptome Micro Array (CATMA) database contains gene sequence tag (GST) and gene model sequences for over 70% of the predicted genes in the Arabidopsis thaliana genome as well as primer sequences for GST amplification and a wide range of supplementary information. All...
Here we show that Arabidopsis cryptochrome 2 (CRY2) forms photobodies with the TCP22 transcription factor in response to blue light in plant cells. We provide evidence that PPK kinases influence the characteristics of these photobodies and that together these components, along with LWD ...
By BLASTing the rice (Oryza sativa) protein database using the entire amino acid sequence of Arabidopsis R3 MYB transcription factor TRICHOMELESS1 (TCL1), we found that there are two genes in rice genome encoding R3 MYB transcription factors, namelyOryza sativa TRICHOMELESS1(OsTCL1) andOsTCL2...
UV-B stimulates the expression of genes encoding enzymes involved in the anthocyanin biosynthetic pathway in Arabidopsis63. UV-B is sensed by the photoreceptor UVR8, which activates the transcription factor HY5; then, HY5 up-regulates the expression of the transcription factors that control the bio...
AP2/ERF proteins of apple (Malus domestica) and Arabidopsis were obtained from the plant transcription factor database (http://plntfdb.bio.uni-potsdam.de/v3.0/). The phylogenetic relationship of RcAP2/ERF was established by the neighbor-joining method with 1000 bootstraps values and was then ...