thaliana (TAIR10.1) genome assembly. We further explored the mobilome of the ddm1 mutant with elevated TE activity. Nanotei captured all TEs previously known to be active in ddm1 and also identified transposition of non-autonomous TEs. Of them, one non-autonomous TE derived from...
Arabidopsis thaliana serves as a model species for investigating various aspects of plant biology. However, the contribution of genomic structural variations (SVs) and their associate genes to the local adaptation of this widely distribute species remain
Although originally primarily a system for functional biology, Arabidopsis thaliana has, owing to its broad geographical distribution and adaptation to diverse environments, developed into a powerful model in population genomics. Here we present chromoso
Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecologydoi:10.1111/1755-0998.12604The self-incompatible species Arabidopsis halleri is a close relative of the self-compatible model plant Arabidopsis thaliana. The broad European and Asian ...
[62]. Cleaned reads were mapped toArabidopsis thalianagenome assembly GCA_000001735.1 (TAIR10) using splice-aware aligner STAR [65], with mapping parameters adjusted toA. thalianagenome characteristics, basic two-pass mode, and allowing for 5% of mismatches to reference genome. Unique counts per ...
Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery The complete unigene set was sequence-analysed against genome drafts of the model legume species itMedicago truncatula /itand itArabidopsis thaliana /itto ... M Michael,...
nanoporeannotationgenomenextflowscaffoldinggenome-sequencinggenome-assemblyarabidopsisarabidopsis-thaliananextflow-pipelinenextflow-pipelines UpdatedSep 11, 2024 Nextflow phylogenomics analysis for arabidopsis maf-cap genes bioinformaticsphylogenomicsgenome-analysisbioinformatics-analysisarabidopsisphylogenomics-pipelinearabidopsis-...
thaliana genome assembly and annotation. TAIR also provides researchers with an extensive set of visualization and analysis tools. Recent developments include several new genome releases (TAIR8, TAIR9 and TAIR10) in which the A. thaliana assembly was updated, pseudogenes and transposon genes were re...
et al. A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation. Proc. Natl Acad. Sci. USA 102, 11934–11939 (2005). 27. Allen, T. M. et al. Uptake of liposomes by cultured mouse bone marrow macrophages: ...
thalianaand sT subgenome (Fig.1cand Extended Data Fig.3a). This may suggest an increased rate of genetic diversity in outcrossingA. arenosaor a differentA. arenosastrain involved in the formation of naturalA. suecica. Whole-genome pairwise alignment analysis also showed more colinear regions ...