The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters.doi:10.1093/NAR/GKY1060Kai BlinVictòria Pascal AndreuEmmanuel L C de Los SantosFrancesco Del CarratoreSang Yup LeeMarnix H MedemaTilmann Weber...
Python57 db-apidb-apiPublic REST API for the antiSMASH database Python36 generate-databasesgenerate-databasesPublic Scripts to generate the databases for antiSMASH's ClusterBlast and KnownClusterBlast. Python32 db-schemadb-schemaPublic The SQL database schema files for the antiSMASH DB ...
tsv_file: downloaded formantiSMASH database Statistic page. target_path: the path where the downloaded file is saved. Convert sequences stored in tsv or excel files to fasta format. #helptable2fasta.py -h#tsv2fastatable2fasta.py -i input.tsv -n seq_id -s seq -t tsv -o output.fasta...
antiSMASH (Medema et al.2011) is a web server and a stand-alone software to identify, annotate, and compare gene clusters that encode the biosynthesis of secondary metabolites in bacterial and fungal genomes. antiSMASH offers a wide range of options to identify and analyze biosynthetic gene cluste...
7. The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters [O] . Kai Blin, Victòria Pascal Andreu, Emmanuel L C de los Santos, 2018 机译:AntisMash数据库版本2:次级代谢物生物合成基因集群中的综合资源 AI...
antiSMASH ClusterBlast Database Generation antismash/generate-databasesPublic Notifications Fork2 Star3 master 3Branches 0Tags Code README AGPL-3.0 license Scripts to generate the databases for antiSMASH's ClusterBlast and KnownClusterBlast. License...
error("[nf-core/funcscan] ERROR: You supplied either the antiSMASH database or its installation directory, but not both. Please either supply both directories or none (letting the pipeline download them instead).") // 2. If both are supplied: Exit if we have a name collision error ...
That removes the old/usr/local/bin/runentrypoint and thus the need to pass the sequence file as the first argument. You still need to map input and output directories, and the/databasedirectory. @kblinSorry for making you the confusion. Below is my clarification on our use case. ...
antiSMASH database 2.0主页 https://antismash-db./#!/start 背景 INTRODUCTION 大多数抗菌和抗真菌药物,以及许多其他适应症药物,都来自微生物天然产物(1)。传统上,生物活性天然化合物是通过经典的分离和分析方法鉴定出来的。近二十年来,基因组数据的不断增加,使我们能够用基因组角度挖掘的方法,以识别和描述基因组...
python3 download_databases.py --database-dir /home/cheng/huty/softwares/antismash/antismash-5.1.1/antismash/databases 六、检查 python3 run_antismash.py -h python3 run_antismash.py --help-showall antismash --check-prereqs 帮助文档正常,似乎没有出现严重的问题 ...