Spatial transcriptomics has revolutionized the study of gene expression within tissues, while preserving spatial context. However, annotating spatial spots’ biological identity remains a challenge. To tackle t
A chromosome-scale genome sequence of pitaya (Hylocereus undatus) provides novel insights into the genome evolution and regulation of betalain biosynthesis Article Open access 06 July 2021 Chromosome-level assemblies of cultivated water chestnut Trapa bicornis and its wild relative Trapa incisa Articl...
Each AU corresponds to the contraction of specific facial muscle groups (e.g., the tightening of the lower eye lids) and, like message-based approaches, may be annotated for occurrence (presence versus absence) or intensity (on an ordinal scale). For an interactive introduction to FACS, see...
The speedup is shown only for the case when the p-value is not equal to 1 (i.e., when s(c,g)=0). CircRNA hsa_circ_0004624 is excluded from the plot as all p-values are equal to 1, meaning that the circRNA is not connected with any term Full size image Fig. 7 A plot of ...
Defiant is designed to test multiple parameters in parallel, to make the final decision on each parameter up to the end user. Defiant has a companion program in Perl, plot_results.pl, which plots the number of DMRs as a func- tion of different parameters using GNUPlot if a user has ...
The domestic pig is known as an excellent model for human immunology and the two species share many pathogens. Susceptibility to infectious disease is one of the major constraints on swine performance, yet the structure and function of genes comprising t
We read every piece of feedback, and take your input very seriously. Include my email address so I can be contacted Cancel Submit feedback Saved searches Use saved searches to filter your results more quickly Cancel Create saved search Sign in Sign up Reseting focus {...
“LTR” were extracted from the complete repeat annotations done by EDTA to build the Class I TEs compartment; similarly, repeats that were “DNA” or “MITE” including the Class II TEs genome fraction. Finally, all regions from the assembly that have not been classified as either genes, ...
Snapshots of ProteinAtlas and MEROPS are included, but due to the large size of the Alphafold database, it should be separately downloaded by the user, and the path specified by setting “alphafold_folder_name = “ equal to the local Alphafold path in annutils.py. ProteinAtlas is used to...
Identifying cellular identities is a key use case in single-cell transcriptomics. While machine learning has been leveraged to automate cell annotation predictions for some time, there has been little progress in scaling neural networks to large data set