the annotation dataset comprising a second set of columns and a second set of rows; assigning row identifiers to each row in the second set of rows, the row identifiers aligning the second set of rows with the first set of rows based on the underlying storage of the raw dataset and annota...
As shown in these tables, although the performance of MIF2GO is slightly lower than that of CFAGO in the CC-GO category for the mouse, rat, and B. subtilis datasets, MIF2GO achieves the optimal performance across all the other datasets. Such tendency further proves the generalizability and...
A deep learning algorithm for 3D cell detection in whole mouse brain image datasets. Plos Comput Biol. 2021;17:e1009074. https://doi.org/10.1371/journal.pcbi.1009074. Article CAS PubMed PubMed Central Google Scholar Negwer M, Bosch B, Bormann M, Hesen R, Lütje L, Aarts L, et al...
Chromatin states for bovine, chicken, and pig are from published datasets (Kern et al.2021; Pan et al.2021) (Table2). Chromosomal regions with particular tissue-specific states are shown as thick bars which are labeled with the state according to the specific terminology used in each publicati...
Metagenomic high-throughput sequencing technologies have provided a quick and sensitive way to explore the ARGs in a single genome or metagenomic samples, and many bioinformatic tools were proposed to annotate genes from the metagenomic datasets. Most methods fall into two categories: assembly-based met...
We compared the two datasets using a non-parametric quantile–quantile plot approach while interpolating the values of the larger data set to fit the size of the smaller one. Comparing TraP of Epi4K DNMs to ClinVar benign variants shows a shift toward higher scores in the epilepsy cohort, ...
We compared the two datasets using a non-parametric quantile–quantile plot approach while interpolating the values of the larger data set to fit the size of the smaller one. Comparing TraP of Epi4K DNMs to ClinVar benign variants shows a shift toward higher scores in the epilepsy cohort, ...
Availability of data and materials The datasets analysed during the current study are available in the Bitbucket repository, https://bitbucket.org/alexeyg-com/irespredictor.Abbreviations circRNA: Circular RNA ORF: Open reading frame IRES: Internal ribosomal entry site ...
GTEx_Analysis_v8_eQTL(~1.45 Gb), a folder containing the significant variant gene pairs from the Genotype-Tissues Expression database (GTEx) (available at:https://gtexportal.org/home/datasets). v7 and v8 are supported by VarGen. Direct link for v7:https://storage.googleapis.com/gtex_analysis...
. These datasets are automatically downloaded when the R code is run. Content The code consists of the following sections: Reference-based automatic annotation This section annotates the query dataset using a previously labeled reference dataset. Many tools exist to do this: we are going over ...