High-throughput analysis of animal behavior requires software to analyze videos. Such software analyzes each frame individually, detecting animals’ body parts. But the image analysis rarely attempts to recognize “behavioral states”—e.g., actions or facial expressions—directly from the image instead...
Here we present an automated motion detector system that use passive infrared sensors to eliminate many drawbacks of currently existing methods. Signals from the sensors are processed by a custom-built inter-face, and after unnecessary data is filtered by a computer software, the total time and ...
In some ways, molecular imaging in small animals has been like having a map of the neighborhood without knowing where the neighborhood is within the city. Investigators have imaged targets deep within animals but have had trouble clearly resolving and identifying the associated internal organs and ot...
We record through the lid with a camera above the chamber. In all three positions (1, 2, 3) shown, the fly would appear over the egg-laying substrate in a video, but it is on it only in position 1. (c) Sample fly images where the flies appears over the egg-laying substrate, ...
This chapter is focused on animal handling during rodent imaging. Particularly in studies of peripheral organs, the nutritional status of an animal may affect the imaging results. Anesthetics can also have a strong impact on scan data, for example, in dr
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This can be done by hand, by an object detector, or as a byproduct of a tracker software. (2.) Annotate the first N BB with class labels. (3.) Extract features from all BB in the video to form the two sets using a chosen feature extraction method, thereby forming the two sets: ...
During acquisition, a camera followed the animal in an arena 100 mm in diameter in real time; therefore, all frames are roughly centered on the fly. The chamber was backlit to provide maximum contrast; however, details on the top of the animal are not visible. Videos were recorded at ...
In this work, we strive to develop high-performance code that requires limited user input yet flexibility. In the code, we provide 3D support for multi-animal pose estimation (via multi-camera use), plus this multi-animal variant can be integrated with our real-time software, DeepLabCut-Live...