NGS data analysis is a computationally intensive process, requiring the storage, transfer, and processing of very large data files (generally 1–3 GB in size). This means access to advanced computing centers on-site via a private network ori...
Learn how automated workflows simplify NGS analysis. Read More Basepair Work is in Dozens of Peer-Reviewed Journals "Fast, excellent and reasonably priced...you CAN get all three!! Thank you to the folks at Basepair for helping us deal with some difficult RNA Seq data." Sharen Mckay ...
Do you spend too much time processing ‘omics data? One of the problems with big data is just that – it's big. There is an almost incomprehensible amount of diverse, non-standardized data that you can use in your ‘omics analyses. You need to invest significant time and resources in fi...
All workshop attendees will be enabled to perform important first tasks of NGS data analysis themselves. The course layout has been adapted to the needs of beginners in the field of NGS bioinformatics and allows scientists with no or little background in computer science to get a first hands-...
Next generation sequencing (NGS) platforms can generate large amounts of sequencing data, but often with high sequence error rates. For low to medium depth data fast and efficient implementation are needed to handle the data. Arguably, downstream analyses should be performed in a probabilistic conte...
Distilling biologically meaningful information from cancer genome sequencing data requires comprehensive identification of somatic alterations using rigorous computational methods. As the amount and complexity of sequencing data have increased, so has the number of tools for analysing them. Here, we describe...
Explore a broad range of informatics software designed to simplify genomic data analysis and management.
The goal of the National Cancer Institute’s (NCI’s) Genomic Data Commons (GDC) is to provide the cancer research community with a data repository of uniformly processed genomic and associated clinical data that enables data sharing and collaborative analysis in the support of precision medicine....
ngstk Introduction The R package ngstk can be used to facilitate the analysis of NGS data, such as visualization, conversion of the data format for WEB service input and another purpose. In NGS data analysis process, a few of duplicated small scripts, colors theme always be created by us...
MiXCR is a universal software for fast and accurate analysis of raw T- or B- cell receptor repertoire sequencing data. It works with any kind of sequencing data:Bulk repertoire sequencing data with or without UMIs Single cell sequencing data including but not limited to 10x Genomics protocols ...