In 1972 Bazant (1972) proposed a simplified analytical model of the concrete creep function implemented in a numerical algorithm for solving Volterra’s equations. This work is on the basis of Bazant’s successive research on creep, and therefore of the RILEM creep model B3 (Bazant and Baweja...
Importantly, the epitope for mAB7899 antibody conferring parasite killing in vitro has been mapped to a perfectly conserved block of the protein in which high scores for linear B cell epitopes were predicted in this region by the BepiPred 3 algorithm (Supplemental Fig. S2). Although ...
[0008] In accordance with the present invention, a clustering algorithm is employed in the analysis of digitized fluorescence images of DNA microarrays. For each pixel xi in a gene spot image, the red and green intensity values are determined as a vector (Ri, Gi). While Cy5 (red) and Cy3...
(2012). PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies. Nucleic Acids Res 40: e126. Allers E, Moraru C, Duhaime MB, Beneze E, Solonenko N, Barrero-Canosa J et al. (2013). Single-cell and popula- tion ...
Finally, intrinsic subtypes were assigned to each sample using the previously defined PAM50 algorithm [6]. Protein expression A total of 151 primary antibodies were probed using the RPPA technique to detect breast cancer-related proteins. Tumor tissue was lysed using a lysis buffer containing ...
DIAMOND, an open-source algorithm, can align DNA and protein sequences quickly to corresponding database [59]. Here, we mapped the amino acid sequences of gene catalog into the proteins in eggNOG and KEGG databases using DIAMOND program with default parameters (e value ≤ 1e− 5), ...
MS/MS spectra from each LC-MS/MS run were searched against the IPI human database using an in-house Mascot or Proteome Discoverer (Version 1.3) searching algorithm. The search criteria were as follows: full tryptic specificity was required; two missed cleavages were allowed; carbamidomethylation...
For each pair, the BLASTN algorithm was used to evaluate their similarity. GIs with ≥ 80% overlap to each other were considered pairs of homologues. Evolutionary distance between each pair was obtained by the sequence similarity distance in the HKY85 model using PAUP [23, 24]. The matrix ...
(1988). The antigenic index: a novel algorithm for predicting antigenic determinants. Comput. Appl. Biosc.,i Vol.4, pp. 181-186. Jiménez-Marín, A., Garrido, J.J, De Andrés, D.F., Morera, L., LLanes, D. & Barbancho, M. (2000). Molecular cloning and characterization of the ...
Many previous studies have focussed on the statistical advantages and limitations of GSEA methods, providing the field with important information on performance metrics for each algorithm7. While these algorithms were developed to identify statistical significance between user-selected groups of samples, ...