Allele frequency analysis - overview How to run an allele frequency analysis Genotype filesAnalysis, Allele Frequency
GADMA: genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data. Gigasci. 2020;9(3). Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD. Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data...
Populations of bluegill within reservoirs are generally homogeneous for frequencies of common alleles at polymorphic loci, but there is significant heterogeneity in allele frequencies between reservoirs within a drainage. The magnitude of this variance is greatest in the intergrade populations of the ...
HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in the
2007), filtering out alleles with a minor allele frequency < 0.001 (f 0.001). Second, we inferred the probability of assignment of each individual to a given number of K ancestral clusters, using TESS3R (Caye et al. 2016), also considering the geographic location of the sampled ...
Familial adenomatous polyposis type 1 (FAP1) is a gastrointestinal polyposis syndrome characterized by the development of hundreds to thousands of adenomatous polyps in the colon and elsewhere in the gastrointestinal tract at a young age. From: Practical Surgical Neuropathology: A Diagnostic Approach (...
The temporal method for estimating variance effective population size (Ne) based on allozyme multilocus gamete frequency data in coniferous populations is proposed. The method was applied to a Scots pine (Pinus sylvestris L.) seed orchard consisting of 32 clones (parents), and the genotypes of po...
This analysis revealed VEX2 at the interface between a VSG-ES focus and one of the two diploid SL-arrays (Fig. 1f). Fig. 1: VEX2 is allele-selective. a–e VEX2myc chromatin immunoprecipitation followed by deep sequencing (ChIP-Seq). VEX2 enrichment across the genome is expressed as ...
An illustration of B allele frequency, Log R ratio, and CNV value for CNVs at chromosome 6p21.3 (left) and 11q14.3 (right) generated from GenomeStudio (v.3... SYL Joyce,MC Yoon,M Taisei,... 被引量: 0发表: 2016年 The importance of genetic influences in asthma Asthma is a complex ...
whereμ=mutation rate,x=number of mutant offspring, andN=total number of offspring examined. The factor 2 is used because each offspring develops from fertilization involving two haploid gametes. Each haploid gamete contains one allele that can potentially be the mutant allele. Therefore, the mutati...