The non-docker version was tested with the following system configuration Dell server CPU: AMD EPYC 7601 2.2 GHz RAM: 1 TB GPU: NVIDIA Tesla V100 16G OS: CentOS 7 (kernel 3.10.0-1160.24.1.el7.x86_64) Cuda: 11.3 NVIDIA driver version: 470.42.01 ...
2. 安装Docker 3. 为A100安装NVIDIA驱动程序 4. 获取基因数据库 5. 获取模型参数 6. 构建AlphaFold3 Docker容器或Singularity镜像 获取AlphaFold3源代码 通过git下载AlphaFold3的代码库：git clone https://github.com/google-deepmind/alphafold3.git 获取基因数据库 此步骤需要「curl」和「zstd」。AlphaFold3需要多...
Dear author: I followed the steps to configure the environment(CPU), but at the end run_alphafold.sh reported an error: /lustre/user/lulab/gaojd/whr/software/miniconda3/envs/alphafold/lib/python3.8/site-packages/absl/flags/validators.py:...
alphafold2安装方式有两种:docker安装和非docker安装。Deepmind开源代码中提供的是构建docker镜像来运行af2。由于网络环境差异,在国内完全按照代码中说明一步步来安装是基本不可能的。这里我们使用非docker方式安装和运行alphafold2,可以顺畅完成整个安装流程,主要参考https://github.com/kalininalab/alphafold_non_docker。 1...
Hi, deepmind group, I am trying to run Alphafold with the most recent version and getting this error: FATAL Flags parsing error: Unknown command line flag 'run_relax'. I configured it using a non-docker environment. It would be great if ...
6. 构建AlphaFold3 Docker容器或Singularity镜像 获取AlphaFold3源代码 通过git下载AlphaFold3的代码库: git clone https://github.com/google-deepmind/alphafold3.git 获取基因数据库 此步骤需要「curl」和「zstd」。 AlphaFold3需要多个基因(序列)蛋白质和RNA数据库来运行: - BFD small - MGnify - PDB(mmCIF格式...
使用docker安装在上述第5步一直卡着,于是开始尝试使用conda安装: 主要参考的安装流程:https://github.com/kalininalab/alphafold_non_docker参考后安装失败的流程:https://github.com/kuixu/alphafold;https://github.com/google-deepmind/alphafold/issues/510 ...
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Hi, I install AF_non_docker as this git site. I think every thing goes smoothly in installation. When run 'bash run_alphafold.sh', a "Couldn't get ptxas version string" occurred. Any way to fix this issue? 2021-11-20 11:04:09.946403: W t...
AlphaFold Non-Docker setup 首先第一步:安装conda: 代码语言:javascript 代码运行次数:0 运行 AI代码解释 wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && bash Miniconda3-latest-Linux-x86_64.sh 第二步:创建conda环境并且更新和激活 代码语言:javascript 代码运行次数:0 运...