qiime diversity beta-group-significance \--i-distance-matrix core-metrics-results/unweighted_unifrac_distance_matrix.qza \--m-metadata-file sample-metadata.tsv \--m-metadata-column BodySite \--o-visualization core-metrics-results/unweighted-unifrac-body-site-significance.qzv \...
Overall, a combined use of species richness and beta diversity metrics showed alpha and beta diversity are not always congruent and that there are various ways to interpret scenarios of temporal beta diversity in northern freshwater systems.doi:10.1139/cjfas-2016-0449...
territorial uses (i.e., natural land uses and protected surface), functional diversity is more associated with economic aspects (i.e., annual income per inhabitant and employment rate) (Lazzari et al., 2020). Therefore, we argue that integrating multiple biodiversity metrics is essential to ...
19k Accesses 75 Citations 35 Altmetric Metrics details Abstract Background Vertebrate skin appendages are constructed of keratins produced by multigene families. Alpha (α) keratins are found in all vertebrates, while beta (β) keratins are found exclusively in reptiles and birds. We have studie...
之后计算Beta多样性 这里的代码使用的是官网上201802的,和之前2017的有一点点区别,主要是分组的时候 --m-metadata-category 要改为 --m-metadata-column qiime diversity beta-group-significance \ --i-distance-matrix core-metrics-results/unweighted_unifrac_distance_matrix.qza \ --m-metadata-file sample-...
Alpha diversity metrics, Phylogenetic Distance and Observed Species throughout the GIT of the gilthead sea bream.G. EstruchM. C. ColladoD. S. PeñarandaA. Tomás VidalM. Jover CerdáG. Pérez MartínezS. MartinezLlorens
Beta diversity analysis was performed by Jaccard, Bray–Curtis, unweighted UniFrac and weighted UniFrac outputs to assess the difference between groups using PERMANOVA in R software (version 2.15.3, vegan package). In addition, the linear discriminant analysis effect size (LEfSe, http://huttenhower...
Diversity of structure and function of alpha1alpha6beta3delta GABAA receptors: comparison with alpha1beta3delta and alpha6beta3delta receptors delta subunit-containing gamma-aminobutyric acid, type A (GABA(A))receptors are expressed extrasynaptically and mediate tonic inhibition. In cerebellar gra.....
Global patterns of regional (gamma) plant diversity are relatively well known, but whether these patterns hold for local communities, and the dependence on spatial grain, remain controversial. Using data on 170,272 georeferenced local plant assemblages,
Metrics Abstract Artificial intelligence-based protein structure prediction approaches have had a transformative effect on biomolecular sciences. The predicted protein models in the AlphaFold protein structure database, however, all lack coordinates for small molecules, essential for molecular structure or func...