We use as a laboratory to test our algorithm a dataset obtained from six independent human brains from the Allen Human Brain Atlas. We show that the proposed method is indeed able to identify universal patterns much better than more traditional algorithms such as Latent Dirichlet Allocation or ...
1.4. Allen Human Brain Atlas The Allen Human Brain Atlas (AHBA, http://human.brain-map.org/) provides the most comprehensive transcriptomic data on the anatomy of the human brain. The AHBA is a multimodal atlas of gene expression that provides a visualization and data mining tool that allow...
The Allen Brain Atlas, a Web-based, genome-wide atlas of gene expression in the adult mouse brain, was an experiment on a massive scale. The development of the atlas faced a combination of great technical challenges and a non-traditional open research model, and it encountered many hurdles ...
The Allen Brain Atlas is an online publicly available resource that integrates gene expression and connectivity data with neuroanatomical information for the mouse, human, and non-human primate. Launched in 2004 by the Allen Institute for Brain Science,
One of the recent studies involved the Allen Human Brain Atlas in the imaging study of schizophrenia. The combination of the two methods mitigated the gap between the human brain imaging and genetic mechanism, and enabled us to observe the transcriptome alterations and brain changes at the same ...
The Allen Brain Atlas (ABA), publicly available at http:// www.brain-map.org, presents the expression patterns of more than 21,500 genes in the adult mouse brain. The project has produced more than 600 Terabytes of cellular level in situ hybridization da
The Allen Mouse Brain Common Coordinate Framework (CCF) is a 3D reference atlas that has already undergone several revisions. The first version, CCFv1, was created to support whole brain gene expression mapping and searches (Lein et al., 2007). We converted a subset (n = ∼200) of the...
Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas. - chrisgorgo/alleninf
Five years after the launch of the Allen Brain Atlas, Jones and colleagues describe the challenges faced during the early years of the project, the contributions that it has made to neuroscience research to date and the opportunities for its use in the f
abagen: A toolbox for the Allen Brain Atlas genetics data This package provides a Python interface for fetching and working with theAllen Human Brain Atlas(AHBA) microarray expression data. Overview In 2013, the Allen Institute for Brain Science released theAllen Human Brain Atlas, a dataset co...