In the vast majority of cases, whatever the species, whatever the...doi:10.1186/s12864-019-5624-2Bahin, MathieuNoël, Benoit F.Murigneux, ValentineBernard, CharlesBastianelli, LeilaLe Hir, HervéLebreton, AliceGenovesio, AugusteBioMed CentralBMC Genomics...
ALFA provides a global overview of features distribution composing NGS dataset(s). Given a set of aligned reads (BAM files) and an annotation file (GTF format with biotypes), the tool produces plots of the raw and normalized distributions of those reads among genomic categories (stop codon, ...
Mapping short DNA sequencing reads and calling variants using mapping quality scores Here we introduce the concept of mapping quality, a measure of the confidence that a read actually comes from the position it is aligned to by the ...
Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end reads with respect to an assembled reference. - jitterbug/AlignedReadPair.py at master · zongchangli/jitterbug
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They are typically tested on simulated and real data sets in FASTQ format, and have been shown to perform well on some of the early stages of genomic sequencing pipelines, such as correcting base calling errors in the simulated data sets, increasing both breadth and depth of reads coverage ...
Under the assumptions of alignment, vanishing EW gauge couplings, and vanishing SM-like Higgs mass, the BSM part of the two-loop self-energy of the photon reads Πγγ2ℓ,BSM(0)=α48π3v2[ (mH±2−M2)2Fh(mH±2)+(mH2−mH±2)24FG(mH2,mH±2)+(mA2−mH±2)24FG(mA2,mH...
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Clustering and assembly of these reads produced a non-redundant set of 117,854 unigenes, comprising 13,194 isotigs and 104,660 singletons. Based on ... H Liu,T Wang,J Wang,... - 《Plos One》 被引量: 28发表: 2013年 Diversity Measures in Environmental Sequences Are Highly Dependent on...
In modern computers CPU caches memory it reads. Memory cache build of 32 and 64 byte long cache lines. Even when you read just one byte from the memory, CPU reads a complete cache line and places it into the cache. This way reading 8 bytes from offset 5 or from offset 0 makes no ...