This chapter presents new algorithmic methods for next-generation sequencing data. It focuses on the application of resequencing. Here, the authors present the basic definitions and notations that are used throughout the chapter. They also present REad ALigner (REAL), an efficient, sensitive, and ...
Aligning sequencing reads onto a reference is an essential step of the majority of genomic analysis pipelines. Computational algorithms for read alignment have evolved in accordance with technological advances, leading to today’s diverse array of alignm
Prosperi MCF, Prosperi Luciano and Bruselles A, Abbate I, Rozera G, Vincenti D, Solmone MC, Capobianchi MR and Ulivi G, 2011, Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing , BMC bioinformatics , 12 ( 1 ), 5 doi: 10.1186/1471-2105-...
Next-generation sequencing (NGS) offers a unique opportunity for high-throughput genomics and has potential to replace Sanger sequencing in many fields, including de-novo sequencing, re-sequencing, meta-genomics, and characterisation of infectious pathogens, such as viral quasispecies. Although methodologi...
Minimum number of platforms required for a railway Job sequencing Problem Fractional Knapsack Problem Greedy algorithm to find minimum number of coins Activity Selection (it i s same as N meeting in one room) Day9 (Recursion):Subset Sums Subset-II Combination sum- Combination sum Pa...
Single-cell proteomics enabled by next-generation sequencing or mass spectrometry. Nat. Methods 20, 363–374 (2023). Article CAS PubMed Google Scholar Gatto, L. et al. Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nat. Methods 20, 375–...
A pipeline that uses read-level features and extra trees/random forest algorithms for accurate and fast detection of somatic mutations in next generation sequencing data - anderdnavarro/RFcaller
We also use optional cookies for advertising, personalisation of content, usage analysis, and social media. By accepting optional cookies, you consent to the processing of your personal data - including transfers to third parties. Some third parties are outside of the European Economic Area, with...
Infrastructure and systems tools for high-performance bioinformatics Metagenomics Next-generation sequencing Phylogeny inference Protein structure prediction and modeling Workflow and systems for big biological data management The WACEBI 2016 workshop will be held in conjunction with the IEEE International Confe...
References 1 DePristo MAea: A framework for variation discovery and genotyping using next- generation DNA sequencing data. 2011; 43: 491-498. 2 Purcell S, Neale B, Todd-Brown K et al: PLINK: a tool set for whole-genome association and population-based linkage analyses. The Amer...