Python Code: # Import the date class from the datetime module to work with datesfromdatetimeimportdate# Define a class called Person to represent a person with a name, country, and date of birthclassPerson:# Initialize the Person object with a name, country, and date of birthdef__init__(...
Python language and matplotlib library were employed for plotting. For the continuous reference limits, all statistical analysis was performed using statsmodels library. Continuous reference limits were established14. Data were analyzed completely according to Clinical and Laboratory Standards Institute (CLSI)...
ANCOVAs, Spearman’s correlations, Pearson’s correlations, and mediation analysis, were performed using the python package Pingouin117. Welch’s ANOVAs were used to compare average controllability in 15 identified hubs in middle-aged and old-aged adults. We used the Bonferroni method to correct...
The calculation is performed using allc-to-region-count function in ALLCools (https://lhqing.github.io/ALLCools). DNA methylation valleys To call DNA methylation valleys (DMVs), we first identified undermethylated regions (UMRs) and low methylated regions (LMRs) using MethylSeekR.113 We ...
Calculation of cAge can be performed either using a standalone script (https://github.com/elenabernabeu/cage_bage/tree/main/cage_predictor) or by uploading DNAm data to our MethylDetectR shiny app (https://shiny.igmm.ed.ac.uk/MethylDetectR/). As the weights for GrimAge and its ...
All analyses were performed by using Python 3.8.17. Here, we listed the most important packages with the version numbers in parentheses: • Basic packages for data manipulation: numpy (1.24.4), pandas (1.5.3) • Packages to handle AnnData: scanpy (1.9.3) • Statistics and machine ...
23,24 Statistical Analysis Stata IC, version 14.0 (StataCorp LP) and Python 2.7 (Enthought Inc) were used for statistical analysis to assess data collected from January 2015 to January 2018. Normality was tested using the Shapiro-Wilk test. Study groups were described using mean (SD) values,...
Note that calculation of neutralization curves assumes that antibody is in excess of virus, and if this is not the case, the measured IC50 will be artificially high. For some highly potent sera (IC50=1x10-4 dilution or lower), serum dilution volumes were therefore increased to 100μL to ...
visualization and AUC calculation were implemented on the basis of the functions roc_curve, auc and RocCurveDisplay in the Python package sklearn.metrics (version 1.2.1). The 95% confidence interval was programmed using the function norm.interval in the Python package scipy.stats (version 1.10....
This study led to the development of a variational autoencoder (VAE) for estimating the chronological age of subjects using feature values extracted from their teeth. Further, it determined how given teeth images affected the estimation accuracy. The dev