Some of the ID conversion tools are more specific, such as those that work only at the probe level.GATExplorer[40] is a web based tool for analysis and visualization of Affymetrix®;probes at the genomic and transcriptomic level. It performs de–novo mapping of all the probes of Affymetrix...
Oncotype DX29panel was built (Supplementary Note5). Expression of each gene is calculated from the molecule count of each amplicon, based on UMI count and conversion yield, and is further normalized relative to the expression level of the 5 reference genes in log2 scale (Supplementary Fig.S9)...
Fig. 1 Cellular levels of protein complexes involved in the conversion of solar to chemical energy. Consensus cpc ranges for the subunits are condensed from the different quantification methods, as described in Results and Discussion, with individual data-points shown in boxplots in Supplementary Fig...
The details of gene-specific qRT-PCR primers are listed in Supplementary Table S4. The primers were designed using the Primer-BLAST program (https://www.ncbi.nlm.nih.gov/ tools/primer-blast) based on National Center for Biotechnology Information (NCBI) sequence data (http://www.ncbi.nlm....