wget https://github.com/simonhmartin/tutorials/raw/master/ABBA_BABA_windows/data/hel92.DP8HET75MP9BIminVar2.chr18.geno.gz wget https://github.com/simonhmartin/tutorials/raw/master/ABBA_BABA_windows/data/hel92.pop.txt wget https://github.com/simonhmartin/tutorials/raw/master/ABBA_BABA_windo...
ABBA-BABA分析主要应用于哪些领域? 如何获取全基因组SNP数据? 简介 ABBA BABA 统计(也称为“D 统计”)为偏离严格的分叉进化历史提供了简单而有力的测试。因此,它们经常用于使用基因组规模的 SNP 数据(例如来自全基因组测序或 RADseq)来测试基因渗入。 在本次实践[1]中,我们将结合使用可用软件和一些用 R 从头编...
ABBA BABA 统计(也称为 D 统计)为偏离严格的分叉进化历史提供了简单而有力的检验。因此,它们经常用于使用基因组规模的 SNP 数据测试基因渗入。 虽然最初开发用于基因渗入的全基因组测试,但它们也可以应用于较小的窗口,从而可以探索基因渗入的基因组景观。
wget https://github.com/simonhmartin/tutorials/raw/master/ABBA_BABA_windows/data/hel92.DP8HET75MP9BIminVar2.chr18.geno.gz wget https://github.com/simonhmartin/tutorials/raw/master/ABBA_BABA_windows/data/hel92.pop.txt wget https://github.com/simonhmartin/tutorials/raw/master/ABBA_BABA_windo...
ABBA BABA 统计(也称为“D 统计”)为偏离严格的分叉进化历史提供了简单而有力的测试。因此,它们经常用于使用基因组规模的 SNP 数据(例如来自全基因组测序或 RADseq)来测试基因渗入。 在本次实践中,我们将结合使用可用软件和一些用 R 从头编写的代码来执行 ABBA BABA 分析。我们将分析来自几个 Heliconius 蝴蝶种群...
Hlengiwe Mhlaba - Abba Baba
Performs_ABBA_BABA_on_populations_onlychrXBen, EvansAnthony, TosiKai, ZengJonathan, DushoffAndre, CorveloDon, Melnick
of the Andes in Colombia. There are also two pairs of sympatric races ofH. melpomeneand H. timareta from the eastern slopes of the Andes in Colombia and Peru. Finally, there are two samples from an outgroup speciesHeliconius numata, which are necessary for performing the ABBA BABA analyses....
(experimental) Dsuite Dquartets - Calculate the D (ABBA-BABA) and f4-ratio statistics for all possible quartets of populations/species (no outgroup) Usage: Dsuite Dquartets [OPTIONS] INPUT_FILE.vcf SETS.txt Calculate the D (ABBA/BABA) and f4-ratio (f_G) statistics for all quartets of ...
ABBA BABA statistics The ABBABABAstatistics are used to detectandquantify an excess ofsharedderived alleles, which canbeindicative of gene flow. Given three populationsandan outgroup with the relationship (((P1, P2),P3) O), these statistics test forsharingof genetic variationbetweenP3andP2butnot ...