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Crosslinking was terminated by the addition of 1/10 volume 1.25 M glycine for 5 min at room temperature followed by cell lysis and sonication (Bioruptor, Diagenode), resulting in an average chromatin fragment size of 200 bp. Fragmented chromatin was then used for immunoprecipitation using...
A one-tenth volume of the sonicated lysate was saved for the input fraction control. The LWD1 or TCP22- associated chromatin complexes were immunoprecipitated by incubating the lysate with 3 ml rabbit polyclonal antisera generated with recombinant LWD1 (amino acid residues 1–73) or a polypeptide...
reporter gene driven by promoters containing TBS (mini35S was used as a negative control) (Student’sttest; *<0.005). Similar results were observed in three independent experiments. Full size image Electrophoresis mobility shift assay showed that TCP20 and TCP22 could form a protein–DNA complex...
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Types IV-A1 and IV-A3 ternary complexes were reconstituted by incubation of 10 µM type IV effector complexes and 15 µM target DNA for 10 min at RT in a total volume of 200 µl SEC buffer. Subsequently, Type IV-A1 assembly reactions were injected into a Superose 6 Increase 10/...