Energy versus RMSD values of the conformations sampled by (i) Rosetta-SWM, (ii) refinement of Rosetta-SWM conformations by BRiQ, (iii) structure prediction by BRiQ with all native base pairs fixed for A CG-helix, B GCAA-tetra loop, C UUCG-tetra loop, D j55a-P4P6-fixed, and E loopE...
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2002 using a DNA containing 6 A·T base pairs that all crystallized in the HG mode21. Both experimental22and theoretical23approaches showed that d(AT)nsequences were globally more stable in the classical WC B-DNA than in a fully HG double helix, at least in dilute aqueous solutions and i...
The c.10141C>T, p.(Arg3381Ter) variant is located in exon 62 of 78 and identified with a MAF of 0.02067% in population databases (Table1, gnomAD, v2.1.1). This variant occurs in a region with parallel beta-helix (Pbh1) repeats (Fig.2b and Supplementary Fig.S3for residue conservati...
angleofhelix angle of incidence of angle of incidence of angleofincidenceofzer angle of jaw angleofkeenness angleoflight angle of maximum lift angleofneedleinsertio angleofnip angleofnolift angleofobliquityofact angleofopticalaxis angleofoscillation angle of overturn angleofpinching angleofpitch angle...
Apache Helix A cluster management framework for partitioned and replicated distributed resources. License: Apache 2. Apache Airavata Apache Airavata is a software framework for executing and managing computational jobs and workflows on distributed computing resources including local clusters, supercomputers,...
U816-mer dsRNA with 8 contiguous Us. U-helix RNA (1.37 Ang): 3nd3. WC816-mer dsRNA, Watson-Crick helix RNA: 3nd4. Static images of various molecular scenes. Require coordinates on local computer. ShortcutShort Description LBSTG2G3/U9U8 base step , PDB code 4PCO. ...
Helices were connected by a short loop and a single turn of 310 helix between helices α2 and α3. Structural comparison of CcpS with previously reported CcpS homolog IreB structure (PDB ID: 5US5)52 revealed that the overall structure was essentially preserved. However, we could not observe ...
(b) G-G base pair in N1-carbonyl symmetric geometry. Full size image Perusal of the upfield region of the 1H NMR spectrum shows four signals dispersed over a spectral range between δ0.5 and 1.6 p.p.m. with surprisingly low chemical shifts for C14 H2′, C6 H2″, A12 H2″ and A8...
et al. OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice. Plant J. 65, 907–921 (2011). Article CAS PubMed Google Scholar Sun, H. et al. SPL14/17 act downstream of strigolactone signalling ...