Finally, mitochondrial proteins COX1 and CYTB were predicted from these contigs, and the phylogenetic analysis corroborated the protistan origination and heterogeneous distribution of the contaminated contigs. Overall, in this study, we conducted a large-scale scan of protistan contaminant...
A large-scale study of the Trichinella genus in the golden jackal (Canis aureus) population in Serbia. Vet Parasitol. 2015b;212(3–4):253–6. Article PubMed Google Scholar Merkushev AV. 100 years of the research on trichinosis in the USSR. Zool Zhurnal. 1965;11(4):229–31. (In ...
Numerous protozoal and metazoal genera have been described as infecting the members of all major nonhuman primate groups. Many of these are considered to be nonpathogenic, or at least their detrimental effects upon the host have yet to be eludicated. A large number, however, can produce ...
Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates Furthermore, this group is possibly closely related to the SAR clade comprising stramenopiles (heterokonts), alveolates, and Rhizaria. Our results link...
An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 2002;30:1575–84. CAS Google Scholar Katoh K, Standley DM. A simple method to control over-alignment in the MAFFT multiple sequence alignment program. Bioinformatics 2016;32:1933–42. CAS Google Scholar ...
macleodii, were described in one of the first large scale studies of aerobic marine bacterial isolates in 19721. The first isolates obtained from coastal waters of Oahu (Hawaii) were described as motile by unsheathed polar flagella, capable of growing on a minimal medium with glucose and ...
Protozoa quickly colonize new environments, as was shown by Maguire's (1977) study of new volcanic islands. On the other hand, sibling species of the Paramecium aurelia complex have limited distributions on a world wide scale (Sonneborn, 1975) even though the species complex is ubiquitous. B....
Scale bars represent 10 μm. To place the new species into a phylogenetic framework, we built on a previously published dataset of 263 genes [8], extensively expanding the taxon sampling for unicellular relatives of animals and also adding several early-branching animals. The final curated data ...
The de novo transcriptome assembly was carried out using a CLC Genomics Workbench v7.1 (https://www.clcbio.com) which is designed to assemble large transcriptomes using sequences from short-read sequencing platforms. All obtained sequences (contigs) were used as queries for a BLASTX search53 ...
PREQUAL: detecting non-homologous characters in sets of unaligned homologous sequences. Bioinformatics 34, 3929–3930 (2018). CAS Google Scholar Capella-Gutierrez, S., Silla-Martinez, J. M. & Gabaldon, T. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. ...