由于1000G的数据量比较大,通常通过Aspera 进行下载,命令如下 ascp -i bin/aspera/etc/asperaweb_id_dsa.openssh -Tr -Q -l 100M -P33001 -L- fasp-g1k@fasp.1000genomes.ebi.ac.uk:vol1/ftp/release/20100804/ALL.2of4intersection.20100804.genotypes.vcf.gz ./ 2. Globus Globus 是一个软件,通过这个...
由于1000G的数据量比较大,通常通过Aspera 进行下载,命令如下 ascp -i bin/aspera/etc/asperaweb_id_dsa.openssh -Tr -Q -l 100M -P33001 -L- fasp-g1k@fasp.1000genomes.ebi.ac.uk:vol1/ftp/release/20100804/ALL.2of4intersection.20100804.genotypes.vcf.gz ./ 2. Globus Globus 是一个软件,通过这个...
由于1000G的数据量比较大,通常通过Aspera 进行下载,命令如下 ascp -i bin/aspera/etc/asperaweb_id_dsa.openssh -Tr -Q -l 100M -P33001 -L- fasp-g1k@fasp.1000genomes.ebi.ac.uk:vol1/ftp/release/20100804/ALL.2of4intersection.20100804.genotypes.vcf.gz ./ 2. Globus Globus 是一个软件,通过这个...
由于1000G的数据量比较大,通常通过Aspera 进行下载,命令如下 ascp -i bin/aspera/etc/asperaweb_id_dsa.openssh -Tr -Q -l 100M -P33001 -L- fasp-g1k@fasp.1000genomes.ebi.ac.uk:vol1/ftp/release/20100804/ALL.2of4intersection.20100804.genotypes.vcf.gz ./ 2. Globus Globus 是一个软件,通过这个...
To empirically estimate thresholds for different ancestral populations, we conducted GWAS simulations using the 1000 Genomes Phase 3 data set for Africans (AFR), Europeans (EUR), Admixed Americans (AMR), East Asians (EAS) and South Asians (SAS). The estimated empirical genome-wide significance ...
GWAS using more complete reference sets for imputation, such as those from The 1000 Genomes project, promise to identify novel loci that have been missed by previous efforts. To investigate the value of such a more complete variant catalog, we conducted a GWAS meta-analysis of kidney function ...
The 1000 Genomes Project An international effort that began in 2008, 1kGP addressed a community need to identify and catalog normal genetic variation across diverse populations. In its first phase, the 1kGP consisted of 1092 individuals from 14 subpopulations in Africa, Asia, Eur...
Our estimated thresholds were DISCUSSION In the present study, we estimated the empirical genome-wide significance thresholds for the five ancestral populations based on the GWAS simulations conducted using the 1000 Genomes Project Phase 3 data set. The results suggested that, for non-African ...
1000 Genomes, 1000 Genomes Project4; GRCh37, Genome Reference Consortium human genome build 3745; HGVS, Human Genome Variation Society24; LRG, Locus Reference Genomic.46 The Sequence Ontology set of terms and relationships are used to describe features and attributes of biological sequences.25 ...
BMC Bioinformatics (2021) 22:273 https://doi.org/10.1186/s12859-021-04169-6 RESEARCH Open Access Cataloguing experimentally confirmed 80.7 kb‑long ACKR1 haplotypes from the 1000 Genomes Project database Kshitij Srivastava, Anne‑Sophie Fratzscher, Bo Lan and Willy Albert...